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11 protocols using panc 1

1

Cell Line Culture Protocols

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The human PDAC cell lines AsPC1, BxPC3, and Hpne were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). Panc1, Capan2, Panc02, and 293 T cells were purchased from the Cell Resource Center, Institute of Biochemistry and Cell Biology at the Chinese Academy of Science (Shanghai, China). All cell lines were cultured in Dulbecco’s modified Eagle’s medium (DMEM; GIBCO, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS; GIBCO) at 37 °C and 5% CO2. Cells were confirmed to be free of mycoplasma using the Bimake mycoplasma detection kit.
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2

Cell Line and Mouse Model Protocols for Cancer Research

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Cell lines were obtained from either the American Type Culture Collection (MIA PaCa-2, Panc-1, HEK293, and Raji) or the Cell Resource Center of Peking Union Medical College (BxPC-3, NIH3T3, and Jurkat) and regularly maintained in the lab. Culture was based on either DMEM (MIA PaCa-2, Panc-1, HEK293, and NIH3T3) or RPMI 1640 (BxPC-3, Jurkat, and Raji) supplemented with 10% fetal bovine serum (Gemini, Australia) and 1% penicillin and streptomycin (Life Technologies, USA) under 5% CO2 at 37°C.
BALB/c nude mice and C57BL/6 mice used for tumor model establishment were ordered from Beijing Vital River Laboratory Animal Technology and monitored regularly in Laboratory Animal Research Center of Tsinghua University. Animal care was under surveillance during the experiments, and the protocols were approved by the Institutional Animal Care and Use Committee of Tsinghua University and carried out in accordance with the People's Republic of China Legislation Regarding the Use and Care of Laboratory Animals.
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3

Cell Culture and Authentication Protocol

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HEK293T, PaTu-8988T, PANC-1, C2C12, and 3T3-L1 cells were purchased from the Cell Resource Center and authenticated by authentication testing (Chinese Academy of Sciences, Shanghai, China). All cells were cultured in high-glucose Dulbecco's modified Eagle's medium (DMEM, Sigma-Aldrich) containing 12% calf serum (Sigma-Aldrich), 100 U/mL penicillin (Beyotime Biotechnology, Shanghai, China), 100 μg/mL streptomycin (Beyotime Biotechnology), and 0.25 μg/mL amphotericin B (Sangon Biotech, Shanghai, China) at 37 °C in a 5% CO2 incubator (Thermo Fisher Scientific, Waltham, MA, USA). During metabolic studies, all cells were tested for mycoplasma and declared mycoplasma-free using a MycoAlert™ PLUS detection kit (Lonza Corporation, Basel, Switzerland).
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4

FAM83B Knockdown in Pancreatic Cancer Cells

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Human PDAC cell lines PANC-1, AsPC-1, Capan-2 and SW1990 were purchased from the Cell Resource Center, Shanghai Institute of Biochemistry and Cell Biology at the Chinese Academy of Sciences and the normal control pancreatic ductal epithelial cell line hTERT-HPNE was obtained from American Type Culture Collection (ATCC). All cell lines were cultured as recommended in growth medium supplemented with 10% fetal bovine serum (FBS) and incubated at 37 °C with a humidified atmosphere of 5 % CO2.
Three small interfering RNAs (siRNAs) against human FAM83B were transfected into human PDAC cells using the DharmaFECT 1 siRNA transfection reagent (Thermo Scientific Dharmacon lnc. USA) according to the manufacturer's instruction, while nonspecific siRNA was applied as a negative control. Real-time PCR was performed to measure the knockdown efficiency of the three FAM83B-siRNAs, and the most efficient one was chosen for further experiment. All the experiments were conducted in the log phase of cell growth. All the siRNAs were designed and synthesized at Genepharm Technologies (Shanghai, China). The sequences targeting FAM83B were listed as follows:
5'- CUCGAGGAGUAUCUGUUUATT-3';
5'- GCCAUCUGAUAGUCUCAGUTT-3';
5'- GGGUCUCAGAAGUUAAGGUTT-3'.
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5

Cultivation of Diverse Tumor Cell Lines

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Human breast tumor cell lines (MCF-7 and SKBR-3), hepatic carcinoma cell line (HepG2), pancreatic tumor cell line (Panc-1), prostate tumor cell line (PC-3), and cervical tumor cell line (Hela) were purchased from the Cell Resource Center of Chinese Academy of Medical Sciences (Beijing, China). All cells were cultured in a humidified atmosphere containing 5% CO2 at 37°C.
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6

Culturing Human PC Cell Lines

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The human PC cell lines PANC-1, SW1990, AsPC-1, and BxPC-3 were obtained from Cell Resource Center, Shanghai Academy of Life Sciences, Chinese Academy of Sciences. The cells were cultured in Dulbecco's modified Eagle's medium (DMEM) containing 10% fetal bovine serum (FBS) and maintained at 37°C in 5% CO2.
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7

Cell Culture of PANC-1 and HEK293T

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PC cell line PANC-1 and human embryonic kidney cell HEK293T were purchased from the Cell Resource Center of Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences. The cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM, Gibco, U.S.A.) supplemented with 10% fetal calf serum (Gibco, U.S.A.), 100 U/ml penicillin (HyClone), and 100 μg/ml streptomycin (HyClone) at 5% CO2, 37°C incubator with saturated humidity. All operations were performed under sterile conditions.
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8

Acidic Cell Culture Protocol for Cancer Lines

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The human cancer cell lines including AGS, HGC27, HeLa, Panc-1, HCT116, A549, and U2OS were purchased from the Cell Resource Center, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences (Shanghai, China). MKN45 was purchased from the Cell Resource Center, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (Beijing, China). Hucct1 were obtained from the Japanese Collection of Research Bioresources (JCRB) (Tokyo, Japan). The cell lines were originally authenticated in China Center for Type Culture Collection (CCTCC) by Short Tandem Repeat (STR) profiling and passaged less than 6 months in the lab. These cells are routinely maintained in the laboratory of our group.The acid cell culture medium (pH 6.5) was obtained by the addition of 1 M HCl solution as previously reported23 (link),24 (link). The pH was estimated by the use of a FE20 FiveEasy Plus pH Meter (METTLER TOLEDO Instruments (China), Shanghai, China).
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9

Cell Culture of PANC-1 and HPDE6-C7

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The human PC cell line PANC-1 and the human normal ductal epithelial cell line HPDE6-C7 were purchased from the Cell Resource Center of Shanghai Institute of Biochemistry and Cell Biology, The Chinese Academy of Sciences. The cells were cultured in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.) and maintained at 37°C with 5% CO2.
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10

Pancreatic Cancer Cell Lines and Transfection

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The human PC cell lines BxPC-3, SW1990, and PANC-1 were acquired from Cell Resource Center, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (Beijing, China). The human PC cell line CFPAC-1 was purchased from Kunming Cell Bank, Chinese Academy of Sciences (Kunming, China). The human normal pancreatic cell line H6C7 was purchased from Shanghai Yaji Biological. BxPC-3 cells were cultured in RPMI 1640 medium (Gibco, USA). H6C7, CFPAC-1, and PANC-1 cells were cultured in DMEM medium (Gibco, USA). SW1990 cells were cultured in L-15 Leibovitz Medium. All cell mediums were supplemented with 10% fetal bovine serum (FBS) (Gibco, USA) at 37 ℃ in a humidified atmosphere containing 5% CO2.
Vectors encoding STK31 (oe-STK31), miRNA inhibitor (microRNA-543 inhibitor), negative control (NC vector), control mimic, miRNA mimic (microRNA-543 mimic), control inhibitor, LINC00847 overexpression (oe-LINC00847), and the overexpression control (vector-NC) lentiviruses for LINC00847 silencing (si-LINC00847) and the silencing control (si-NC) were purchased from Ribobio (Guangzhou, China). The manufacturer’s procedure was followed for transfection and infection of cells.
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