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Helix pomatia

Manufactured by Merck Group
Sourced in United States

Helix pomatia is a type of laboratory equipment used for various biological and biochemical applications. It is a snail species that is commonly used as a source of certain enzymes and other biological materials. The core function of Helix pomatia is to provide these materials for research, analysis, and other scientific purposes.

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11 protocols using helix pomatia

1

Glycan Characterization by Enzymatic Digestion

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Glycans were treated, prior to re-analysis by MALDI-TOF–MS, with α-fucosidase (bovine kidney from Sigma-Aldrich), α-mannosidase (jack bean from Sigma), β-glucuronidases (E. coli from Megazyme or Helix pomatia from Sigma; desalted and concentrated ten-fold with a centrifugal device with a 10 kDa molecular weight cut-off before use) or β-N-acetylhexosaminidases (jack bean from Sigma-Aldrich, Xanthomonas manihotis from New England Biolabs, Streptomyces plicatus chitinase from New England Biolabs or in-house-produced recombinant forms of Caenorhabditis elegans HEX-4 specific for β1,4-GalNAc-linked residues or Apis mellifera FDL specific for the β1,2-linked product of GlcNAc-transferase I19 (link)) in 50 mM ammonium acetate, pH 5, at 37 °C overnight (except for pH 6.5 in the case of HEX-4, or pH 7 in the case of E. coli β-glucuronidase or an incubation time of only 3 h in the case of FDL or <2 h for H. pomatia β-glucuronidase). Hydrofluoric acid was used for removal of core or antennal α1,3-fucose or of phosphorylcholine17 (link). As appropriate, treated glycans were re-chromatographed by RP-amide HPLC to ascertain retention time shifts prior to MALDI-TOF–MS. See also Supplementary Note 2 for discussion of glycosidase specificities and Supplementary Figure 23 for the HEX-4 and chitinase sensitivity of defined disaccharide conjugates.
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2

Quantifying PCB 136 Metabolites in Urine

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Two aliquots of each urine sample (0.2 mL) were diluted
with an equal
volume of 0.2 M sodium acetate buffer (pH = 5). To determine if glucuronide
and/or sulfate conjugates of PCB 136 were present in urine samples
both aliquots were incubated in parallel with or without β-glucuronidase/sulfatase
mixture (20 μL; type H-2 from Helix pomatia, 100,000 units/mL; Sigma-Aldrich Co. St. Louis, MO, USA) for 12
h at 37 °C.35 (link) Subsequently, PCB 136
and its hydroxylated metabolites were extracted from urine samples
as described above for blood.
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3

Quantitative Analysis of Curcuminoids in Plasma

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The sample preparation was performed in accordance with Cuomo et al.
[26 (link)]. A 0.2 mL aliquot of plasma was transferred to a clean microcentrifuge tube and next treated with 100 μL of a solution containing 1000 U of β-Glucuronidase/sulfatase (EC 3.2.1.31) from Helix pomatia (Sigma, St. Louis, MO) in 0.1 M phosphate buffer (pH 6.86). The resulting mixture was then thoroughly vortexed and incubated at 37°C for 1 hour to hydrolyze the phase-2 conjugates of curcuminoids. After incubation, curcuminoids were extracted with 1 mL of ethyl acetate, and the mixture was vortexed for 1 minute, followed by sonication in a water bath for 15 minutes. After centrifugation at 15,000 g for 6 minutes, the upper organic layer was transferred to a 2 mL microcentrifuge tube and evaporated to dryness at 30°C under negative pressure in a centrifugal concentrator. This process was repeated for a total of two extractions. This solution concentration was 50 ng/ul. The dried extract was reconstituted in 100 μL of methanol, and 10 μL was injected into the HPLC-MS/MS. An internal standard “Salbutamol” (ISTD) was prepared and used to ensure data accuracy. The standard curcuminoids for quantitation were obtained from Sigma Aldrich, USA.
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4

Genistein and Genistin Quantification

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Genistein,
genistin, and β-glucuronidase (EC3.2.1.31, type H-1, 330 000
units/g solid also containing sulfatase activity) from Helix pomatia and ornidazole as internal standards
were purchased from Sigma-Aldrich (St. Louis, MO). The solvents and
reagents for chromatography were purchased from Spectrum (NJ) and
Macron (Hamilton, PA). The standard solutions of Genistein and genistin
were stored in methanol at −20 °C. Triple deionized water
from Millipore (Bedford, MA) was used for all preparations.
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5

Glucosinolate Standards Characterization

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Nineteen GSL standards, namely glucoiberin (GIB), glucolepidiin (GLP), progoitrin (PRO), epiprogoitrin (EPI), glucoraphanin (GRA), glucoraphenin (GRE), sinigrin (SIN), gluconapin (GNA), sinalbin (SNB), glucomoringin (GMR), glucobarbarin (GBA), glucotropaeolin (GTR), glucobrassicanapin (GBN), glucoerucin (GER), glucobrassicin (GBS), 4-hydroxyglucobrassicin (4HGBS), 4-methoxyglucobrassicin (4MGBS), neoglucobrassicin (NGBS) and gluconasturtiin (GNS), were purchased from Cfm Oskar Co. (Marktredwitz, Germany). Diethylaminoethyl (DEAE)- Sephadex-A25, sodium acetate, HCl, and aryl sulfatase (EC 3.1.6.1, type H-1) from Helix pomatia, were obtained from Sigma-Aldrich (St. Louis, MO, USA). HPLC grade acetonitrile, methanol, and water were obtained from Avantor Performance Materials (Center Valley, PA, USA).
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6

Plasma Curcuminoids Extraction and Quantification

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The plasma samples were prepared according to Cuomo et al. [29 (link)]. A 0.2 mL aliquot of plasma was transferred to a clean microcentrifuge tube and spiked with 100 μL of a solution containing 1000 U of β-glucuronidase/sulfatase (EC 3.2.1.31) from Helix pomatia (Sigma, St. Louis, MO) in 0.1 M phosphate buffer (pH 6.86) and 50 μL of methanol to liberate free curcumin [30 (link)], as a substantial amount of curcumin is glucuronidated or sulfated [23 (link)]. For enzymatic hydrolysation of the phase-2 conjugates of curcuminoids, the resultant mixture was thoroughly vortexed and incubated at 37 °C for 1 h. In a subsequent incubation, curcuminoids were extracted with 1 mL of ethyl acetate, and the mixture was then vortexed for 1 min, followed by sonication in a water bath for 15 min. After 6 min of centrifugation at 15,000g, the resulting upper organic layer was transferred to a 2 mL microcentrifuge tube and evaporated at 30 °C under negative pressure in a centrifugal concentrator to remove residual solvent. This extraction procedure was repeated for a total of two extractions. After treating the dried extract with 100 μL of methanol, 10 μL were injected into the HPLC-MS/MS. “Salbutamol” (ISTD) was used as an internal standard to ensure data accuracy. All standard curcuminoids for the quantification were purchased from Sigma Aldrich, USA.
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7

Quantifying PAH metabolites in urine

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Fifty metabolites of PAH (mono-hydroxylated-PAH, OH-PAH), corresponding to the most common metabolized forms of the 16 PAH used for animal treatment, were assessed in urine samples using a previously published method25 (link). Briefly, urine samples were incubated overnight at 37 °C in present of sulfatase and glucuronidase from Helix pomatia (Sigma-Aldrich, Bormen, Belgium) at pH 5.6. Upon acidification with HCl 32%, the samples were further purified using successively a liquid-liquid extraction with ethyl acetate/cyclohexane (50:50, v/v) and a solid phase extraction onto an Envi-Chrom P cartridge (Sigma-Aldrich, Bormen, Belgium). OH-PAH were eluted with acetate/cyclohexane (50:50, v/v), evaporated, resuspended in cyclohexane/methanol/water (50:40:10, v/v/v). The methanol-water layer containing OH-PAH was evaporated until fully dried. The residue was then further derivatized with 20 µL MtBSTFA for 30 min at 60 °C and then 1 µL was injected into an Agilent 7890 A gas chromatograph equipped with an HP-5MS capillary column (30 m, 0.25 mm i.d., 0.25 µm film thickness), coupled with an Agilent 7000B triple quadrupole mass spectrometer operating in electron impact ionization mode26 (link).
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8

Plasma Curcuminoids Extraction and Quantification

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Curcuminoids were extracted from plasma samples according to the method of Cuomo et al. [3 (link)] Briefly, the plasma samples were thawed for 30 min at room temperature. In the meantime, 50 µL of internal standard solution (250 ng/mL) composed of Curcumin-d6 (ISTD: CND Isotope, Pointe-Claire, QC, Canada) in methanol was added in an empty Eppendorf tube of 1.5 mL to which 0.2 mL of plasma and 100 µL of β-Glucuronidase/Arylsulfatase 10,000 U/mL from Helix pomatia (Sigma-Aldrich, Saint-Louis, MO, USA) diluted in phosphate buffer 0.1 M, pH = 6.86 were added. The tubes were vortexed for 1 min and incubated at 37 °C for 1 h to hydrolyze the phase-2 conjugates of curcuminoids [20 (link),21 (link)]. Then, curcuminoids were extracted two times from the mixture by adding 1 mL of ethyl acetate, then vortexed 1 min and sonicated for 15 min. After sonification, tubes were centrifugated at 15,000 g at room temperature for 6 min. The superior organic phase was then transferred, and the process was repeated a second time. The combined organic phase was evaporated under nitrogen stream. The curcuminoids extract was reconstituted in 100 µL of methanol, centrifuge at 5000 g for 5 min to remove any particles, and 50 µL of the supernatant was then transferred to HPLC vials.
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9

Expansin and Snail Powder Extraction

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Expansin was a gift from Professor Simon McQueen-Mason (University of York, York, UK); it was the α-expansin CsExp1 expressed in tomato plants and dissolved in pH 4.5 35 mM MES/35 mM Acetate buffer containing 200 mM NaCl [59 (link)].
Snail powder extract was prepared by mixing 50 mg of snail acetone power from the visceral hump of Helix pomatia (Sigma-Aldrich, Poole, Dorset, UK, Cat. No. S9764, now discontinued) into 1 mL of MES buffer 10 mM MES buffer containing 5 mM KCl and 1 mM CaCl2 titrated to pH 5.0 with 1 M NaOH using a laboratory vortexer and incubating for 10 min at room temperature before centrifuging for 10 min at 7200× g and collecting the supernatant.
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10

Purification of Chitinase from P. ochrochloron

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The cell-wall-lytic enzyme, chitinase from P. ochrochloron used for the study was purified in author’s laboratory (Patil et al., 2013 ). Elaborately, acetone precipitation of a culture filtrate of P. ochrochloron MTCC 517 followed by dialysis and DEAE–cellulose ion exchange chromatography. Other enzymes used were lysing enzymes from T. harzianum and β-glucuronidase from Helix pomatia (Sigma, St. Louis, MO). Other chemicals used were of highest purity and analytical grade.
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