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9 protocols using ml210

1

Ferroptosis Induction and Inhibition Assays

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The following compounds were obtained from Sigma-Aldrich: ML210 (SML0521, purity ≥ 98%, used at wide concentration range), 1S, 3R-RSL3 (RSL3, SML2234, purity ≥ 98%, used at wide concentration range), ferrostatin-1 (Fer-1, SML0583, purity ≥ 95%, used at 5 μM), erastin (E7781, purity ≥ 98%, used at wide concentration range) and L-buthionine-[S,R]-sulfoximine (BSO, B2515, purity ≥ 97%, used at wide concentration range). Free fatty acids, including oleic acid (OA, C18:1), linoleic acid (LA, C18:2), a-linolenic acid (ALA, C18:3), arachidonic acid (AA, C20:4), eicosapentaenoic acid (EPA, C20:5), docosapentaenoic acid (DPA, C22:5), and docosahexaenoic acid (DHA, C22:6) were purchased from Cayman Chemicals and conjugated with fatty-acid free BSA (Sigma-Aldrich) using previously described protocols51 , and treated cells at 20 μM for 3 days in the viability assays. The following compounds were prepared according to known literature procedures: FINO236 (link) and FIN5634 (link). Alkyne analogs of ML210 and RSL3 (ML210-yne and RSL3-yne, respectively) were synthesized as previously described15 (link).
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2

High-throughput Screening of Ferroptosis Compounds

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ML162 was synthesized by Acme (Palo Alto, CA). Erastin2 (Cat# 27087) and deferoxamine (Cat# 14595) were obtained from Cayman Chemicals (Ann Arbor, MI). Palbociclib (Cat# S1116), pimasertib (Cat# S1475), and 1S,3R-RSL3 (simply, RSL3) (Cat# S8155) were obtained from Selleck Chemicals (Houston, TX). Doxycycline (Dox) (Cat# D3447), ML210 (Cat# SML0521), ferrostatin-1 (Cat# SML0583) and propidium iodide (Cat# P4170) were obtained from Sigma-Aldrich (St. Louis, MO). Abemaciclib (Cat# HY-16297A) was obtained from MedChem Express (Princeton, NJ). Bortezomib (Cat# NC0587961), Q-VD-OPh (Cat# OPH00101M), etoposide (Cat# 12-261-00), DAPI (Cat# D1306) and C11 BODIPY 581/591 were from Thermo Fisher Scientific (Waltham, MA). Compound 28 was synthesized as described47 and provided as a gift by P. Beltran (Ferro Inc). Dox was dissolved in deionized water and stored at −20°C. C11 BODIPY 581/591 was dissolved into methanol and stored at −20°C. All other compounds were dissolved in dimethyl sulfoxide (DMSO) and then stored at −20°C. The compound library (Cat# L1700) was obtained from Selleck Chemicals8 (link).
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3

Ferroptosis Inducers and Inhibitors Protocol

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ML210 (SML0521), RSL3 (SML2234), ferrostatin-1 (SML0583), liproxstatin-1 (SML1414), erastin (E7781) and necrostatin-1 (N9037) were obtained from Sigma-Aldrich, all of which exhibit purity ≥98% by HPLC. z-VAD-FMK was purchased from Thermo Fisher Scientific (FMK001). AGPS inhibitor ZINC-69435460 was synthesized following previously described procedures13 (link). FIN56 was synthesized as previously described (#WO2008140792A1)32 ,33 .
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4

Assessing Ferroptosis Sensitivity in Cancer Cells

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Cells were seeded in 96-well black clear bottom plates (Corning) at 2000 or 3000 cells (1099 +/− TGF-β) and 6000 cells (OVCAR8) per well. Approximately, 12–16 h post-seeding, cells were treated with various drug concentrations using an HP D300e Digital Dispenser unless stated otherwise. Cell viability was assessed at 72 h post-treatment by performing CellTiter-Glo Luminescent Cell Viability Assays (Promega) according to the manufacturer’s instructions. Relative viability was calculated by normalizing to untreated controls unless stated otherwise. Non-linear regression models were applied to generate the regression fit curves using GraphPad Prism. Drug compounds were purchased as indicated: RSL3 (Selleck Chem), ML210 (Sigma Aldrich), and Liproxstatin-1 (Fisher Scientific). For experiments involving ferric ammonium citrate (FAC), FAC (Sigma) was prepared fresh in sterile 1× PBS and manually added directly to cell culture media at the indicated concentrations at the time of seeding into 96-well plates. Unless stated otherwise, cells were pretreated with FAC for 24 h prior to ML210 treatment.
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5

Ferroptosis Induction and Measurement Protocol

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Erastin2 was synthesized by Acme Bioscience (Palo Alto, CA). RSL3 (Cat# S8155) and INK128 (Cat# S2811) were from Selleck Chemicals (Houston, TX). SYTOX Green (Cat# S7020) was from Life Technologies. Dimethyl sulfoxide (DMSO; Cat# 276855), ferrostatin-1 (Cat# SML0583), ML210 (Cat# SML0521), methanol (Cat# 34860), rosiglitazone (Cat# R2408), staurosporine (Cat# S6942), thapsigargin (Cat# T9033), and vinblastine (Cat# V1377) were from Sigma-Aldrich (St. Louis, MO). Bortezomib (Cat# NC0587961) and camptothecin (Cat# AC276721000) were from Fisher Scientific. ZINC-69435460 (AGPSi; Cat# Z1030248250) was from Enamine US Inc. (Cincinnati, OH). C11 BODIPY 581/591 (Cat# D3861) and Hoechst (Cat# H1399) were from Molecular Probes (Eugene, OR). FINO2 was a gift from Keith Woerpel (New York University, NY, NY). CIL56 and FIN56 were gifts from Rachid Skouta (UMass Amherst, Amherst, MA). C11 BODIPY 581/591 was dissolved in anhydrous methanol, and all other chemicals were dissolved in DMSO. All chemicals were stored at −20°C until use.
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6

Small Molecule Acquisition and Preparation

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JZL184 (Cat. no. 13158; ≥97% purity) was purchased from Cayman Chemical. ML239 (SML0442; ≥98%), NSC23766 (SML0952; ≥97%), CP-100356 (PZ0171; ≥98%), elacridar (SML0486; ≥98%), ML210 (SML0521; ≥98%), ferrostatin-1 (SML0583; ≥95%), α-tocopherol (T3251; ≥99%), and N-acetyl-L-cysteine (A7250; ≥99%) were purchased from Sigma. YM-155 (S1130; ≥99%), obatoclax mesylate (S1057; ≥99%), and RITA (S2781; 99%) were purchased from SelleckChem. SC-26196 (4189; 99.2%), quercetin (1125; >98%), and MK-571 (2238; >96.9%) were purchased from Tocris. Austocystin D was purchased from eMolecules. The selective CYP2J2 inhibitor 1-(4-bromophenyl)-4-[4-(hydroxydiphenylmethyl)piperidin-1-yl]butan-1-one was synthesized in-house according to the published methodology (>95% purity)48 (link). All small molecules were dissolved in DMSO, except N-acetylcysteine, which was dissolved in cell culture medium then adjusted to pH 7.5.
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7

Small Molecule Acquisition and Preparation

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JZL184 (Cat. no. 13158; ≥97% purity) was purchased from Cayman Chemical. ML239 (SML0442; ≥98%), NSC23766 (SML0952; ≥97%), CP-100356 (PZ0171; ≥98%), elacridar (SML0486; ≥98%), ML210 (SML0521; ≥98%), ferrostatin-1 (SML0583; ≥95%), α-tocopherol (T3251; ≥99%), and N-acetyl-L-cysteine (A7250; ≥99%) were purchased from Sigma. YM-155 (S1130; ≥99%), obatoclax mesylate (S1057; ≥99%), and RITA (S2781; 99%) were purchased from SelleckChem. SC-26196 (4189; 99.2%), quercetin (1125; >98%), and MK-571 (2238; >96.9%) were purchased from Tocris. Austocystin D was purchased from eMolecules. The selective CYP2J2 inhibitor 1-(4-bromophenyl)-4-[4-(hydroxydiphenylmethyl)piperidin-1-yl]butan-1-one was synthesized in-house according to the published methodology (>95% purity)48 (link). All small molecules were dissolved in DMSO, except N-acetylcysteine, which was dissolved in cell culture medium then adjusted to pH 7.5.
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8

Reagent Sources for Cell Experiments

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RSL3 was purchased from Fisher Scientific (Cat# 611810). ML210 (Cat#
SML0521), cisplatin (Cat# 1134357), and carboplatin (Cat# C2538) were from
Sigma-Aldrich. WNT3a was from Fisher Scientific (Cat# 5036WN010CF, R&D
Systems), and IWR-1-endo was from Santa Cruz (sc-295215A).
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9

Cell Viability Assay with Small Molecules

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For cell viability experiments, cells were treated with a range of concentrations of the indicated small molecule compounds, and relative viability was measured by the CellTiter-Glo Assay. Cells were seeded in 96-well black-wall tissue culture-treated plates at 2,000 to 3,000 cells per well (or 10,500 for primary human monocytes and macrophages), to reach 30% confluency the following day. Cells were treated with compounds 18–24 h after seeding using an HP D300e Digital Dispenser with three biological replicates per condition. For BSA-palmitate and BSA-control experiments, compounds were added manually to cells. 66–72 h after compound treatment, viability was measured using the CellTiter-Glo Luminescent Cell Viability Assay (Promega) as per the manufacturer’s instructions. Unless otherwise specified, relative viability was normalized to the untreated condition. Regression fit curves were computed in Prism 8 or 9 (GraphPad) using four-parameter inhibition nonlinear regression. The mean and standard deviation for three biological replicates of each data point were calculated. The following compounds were used: RSL3 (Selleck Chem), ML210 (Sigma Aldrich), erastin (Selleck Chem), FIN56 (Selleck Chem), Ferrostatin-1 (Sigma Aldrich), Z-VAD-FMK (Selleck Chem), Necrostatin-1 (Selleck Chem), BSA-palmitate (Cayman Chem), BSA-control (Cayman Chem).
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