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9 protocols using il 1β af 401 na

1

Molecular Mechanisms of PKC Signaling Regulation

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CIP (P4978) and DMSO were purchased from Sigma-Aldrich. PKCα (C2-4) inhibitor peptide (17478) was purchased from Cayman Chemical. Flag-PKCα, -β, -δ, and -ξ plasmids were a generous gift from Dr. D. Zhou (Xiamen University, China). The GST-tagged GRA7 and truncated mutant genes were described previously [17 (link)]. V5-tagged AC or AU1-PLD1 and truncated mutant genes were cloned into the XbaI and BamHI sites in pcDNA3.0. All constructs were sequenced using an ABI PRISM 377 automatic DNA sequencer to verify 100% correspondence with the original sequence. Specific antibodies against phospho-(Thr147)-PLD1 (3831), phospho-(Ser561)-PLD2 (3834), PLD1 (3832), PLD2 (13904), PKCα (2056), PKCγ (43806), and NLRP4 (12421) were purchased from Cell Signaling Technology. Antibodies specific for actin (I-19), ASC (N-15-R), IL-18 (H-173-Y), TRAF6 (H-274), caspase-1 p10 (M-20), Rab5 (D-11), Rab7 (H-50), LAMP1 (E-5), LAMP2 (H4B4), Tubulin (B-5-1-2), Calnexin (H-70), FACL4 (N-18), VDAC (B-6), His (His17), V5 (C-9), Flag (D-8), and GST (B-14) were purchased from Santa Cruz Biotechnology. AU1 (GTX23402) and PKCβI (A10-F) were purchased from GenenTex and Antibodies-online Inc., respectively. IL-1β (AF-401-NA) and NLRP3 (AG-20B-0014) were from R&D Systems and Adipogen, respectively.
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2

NLRP1B Activation Assay by Western Blot

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Cells were lysed in RIPA buffer supplemented with 1mM PMSF and 1× Complete Protease Inhibitor Cocktail (Roche). Lysates were spun at max speed in an Eppendorf microfuge at 4°C for 20 min and supernatants were mixed with 6× Laemmli sample buffer. To detect full length and FIIND processed NLRP1B, lysates were incubated at room temperature for 15min prior to SDS-PAGE. To analyze all other proteins, including the N-terminally cleaved form of NLRP1B, samples were boiled for 10min prior to separation. SDS-PAGE was performed with Novex 10% and 12% BisTris gel system according to manufacturer’s instructions (Invitrogen). Separated proteins were transferred to Immobilon-FL PVDF membranes. Membranes were blocked with Odyssey blocking buffer (Licor). The following antibodies were used for the following antigens: HA mAB 3F10 (Roche), MEK-2 SC-13115 (Santa Cruz), MYC mAb 9E10 (Clonetech), IL-1β AF-401-NA (R&D systems). Secondary antibodies anti-rat, mouse and goat were all conjugated to Alexa Fluor-680 (Invitrogen).
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3

Inflammatory Signaling Pathway Analysis

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Menthol and bacterial lipopolysaccharide (LPS) (Escherichia coli, 0111: B4) were purchased from Sigma (USA). Mass spectrometry grade reagents (column, buffer et al.) were all purchased from Sigma (USA). The Mouse Proteome Profiler Array was purchased from R&D Systems (USA). The antibodies used were CCL3 (ab25128, Abcam, USA), IL-6 (12912; Cell Signaling Technology, USA), TNF-α (11948S; Cell Signaling Technology, USA), p-NF-κB (3033; Cell Signaling Technology, USA), NF-κB (8242; Cell Signaling Technology, USA), p-Akt (4051; Cell Signaling Technology, USA), Akt (9272; Cell Signaling Technology, USA), TLR1(2209; Cell Signaling Technology, USA), TNFAIP3 (5630; Cell Signaling Technology, USA), IFIT1 (14769; Cell Signaling Technology, USA), viperin (13996; Cell Signaling Technology, USA), IL-1β (AF-401-NA, R&D Systems, USA), and β-actin (A1978; Sigma-Aldrich, USA). HRP-conjugated secondary antibodies were obtained from Cell Signaling Technologies (7074, 7076; USA).
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4

Immunoblot Analysis of Apoptosis Markers

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GSDMD (Ab209845; Abcam), Casp-1 (Casper1, AG-20B-0042-C100; AdipoGen), Tubulin (Ab40742; Abcam), IL-1β (AF-401-NA; R&D Systems), Caspase-3 (#9662; Cell Signaling Technology), Caspase-7 (#9492; Cell Signaling Technology), Caspase-8 (#9429 and 4927; Cell Signaling Technology), Caspase-9 (#9508 and #9504; Cell Signaling Technology), and Bid (#2003; Cell Signaling Technology).
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5

Immunoblotting for Inflammasome Proteins

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Immunoblotting was performed on cell lysates or precipitates from cell supernatants as described before (2 (link), 47 (link)) with the following the antibodies; caspase-1 p20 (clone casper1; Adipogen), IL-1β (AF-401-NA; R&D Systems), gasdermin D (EPR19828; Abcam), mouse caspase-11 (17D9; Cell Signaling), Stx2 A subunit (11E10; Thermo Scientific), human gasdermin D (EPR19829; Abcam), IL-18 (Biovision), and β-actin (Sigma-Aldrich).
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6

NLRP3 Inflammasome Signaling Pathway

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Antibodies used for western blot were IL-1β (AF-401-NA, R&D System), Caspase-1 (AG-20B-0042-C100, AdipoGen Life Science), NLRP3 (AG-20B-0014-C100, AdipoGen Life Science), ASC (AG-25B-0006-C100, AdipoGen Life Science), phospho-IκBα (Ser32) (#2859, Cell Signaling), IκBα (sc-371, Santa Cruz) and β-actin (#3700, Cell Signaling).
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7

Western Blot Analysis of Inflammasome Proteins

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For western blot analysis, proteins were extracted using RIPA buffer and the concentrations determined using Pierce BCA Protein Assay Kit. Subsequently, proteins were resolved in SDS-PAGE, transferred to 0.45 μm nitrocellulose membranes (Bio-Rad), blocked with 5% non-fat dry milk in PBS with 0.1% Tween 20, and processed for immunodetection. The following primary antibodies were used according to the manufacturer’s instructions: pro-caspase-1 (#ab179515, Abcam), caspase-1 (#14-9832-82, eBioscience), IL-1β (AF-401-NA, R&D Systems), NLRP3 (#768319, R&D Systems), caspase-11 (#mab8648, R&D Systems), GSDMD (ab209845, Abcam), P-STAT-1 (#9167S, Cell Signaling), STAT-1 (#9172S, Cell Signaling), NF-κB-p65 (#49445S, Cell Signaling), NF-κB-p52 (#4882S, Cell Signaling), β-actin (ab3280, Abcam). Antibody detection was performed with HRP-coupled goat secondary anti-mouse or anti-rabbit antibodies (ImmunoResearch), followed by ECL reaction (Perkin Elmer) and exposure to Fuji X-ray films. Finally, films were scanned, and signals quantified using the web-based image processing software ImageJ (NIH).
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8

Investigating NLRP3 Inflammasome Activation

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LPS (L3024), ATP (A1852), Nigericin (N7143), and DSS (D8906) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Abs specific for Flag (D-8), GST(B-14), V5 (E10), NLRP3 (H-66), ASC (N-15), TXNIP (D-2), Tubulin (5F131), Calnexin (AF18), FACL4 (N-18), caspase-1 (14F468, M-20), and Actin (I-19) were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). The antibody to calreticulin (D3E6) and IL-18 (D2F3B) was from Cell Signaling Technology (Danvers, MA, USA), IL-1β (AF-401-NA) was from R&D Systems and NLRP3 (AG-20B-0014) was from Adipogen (San Diego, CA, USA). The antibodies to COX IV (ab16056) and AU1 (ab3401) were purchased from Abcam (Cambridge, UK).
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9

Immunoblotting of Apoptosis Pathway Proteins

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For caspase-1, caspase-8, caspase-3 and IL-1β immunoblotting, cells and supernatant were lysed in cell lysis buffer. For immunoblotting other proteins, cells were lysed using RIPA buffer supplemented with protease and phosphatase inhibitors (Roche). Protein samples were separated by SDS-PAGE and transferred to PVDF membranes. The primary antibodies used are: caspase-1 (AG-20B-0042, Adipogen), ZBP-1 (AG-20B-0010-C100, Adipogen), Influenza A virus NS1 (sc-130568, Santa Cruz Biotechnology), NLRP3 (AG-20B-0014, Adipogen), ASC (04–147, Millipore), caspase-8 (#4927, CST), cleaved caspase-8 (#8592, (CST), cleaved caspase-3 (#9664, CST), Caspase-3 (bs-0081R, Bioss), pIRF3 (clone 4D4G, CST), IRF3 (D83B9, CST), and pSTAT1 (D4A7, CST); IL-1β (AF-401-NA; R&D systems) and GAPDH (#5174, CST) followed by secondary anti-rabbit or anti-mouse HRP antibodies (Jackson Immuno Research Laboratories). Quantification of blots was performed using ImageJ software.
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