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5 protocols using ab109415

1

Epac and NF-κB Regulation in Retina

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Whole retinal lysates were collected in lysis buffer containing protease and phosphatase inhibitors. Equal amounts of protein were separated on a precast Tris-glycine gel (Invitrogen) and blotted on nitrocellulose membrane. After blocking in Tris-buffered saline and Tween 20 (TBST; 10 mM Tris-HCl buffer, pH 8.0, 150 mM NaCl, 0.1% Tween-20) and 5% (w/v) bovine serum albumin, the membranes were treated with Epac1 (ab109415), Epac 2 (ab193665, Abcam), total nuclear factor kappa beta (NFκB; #4764), phosphorylated NFκB (Ser 536, #3303), phosphorylated IκB (Ser32, #2859), total IκB (#4812, Cell Signaling, Danvers, MA), and beta actin (sc-47778, Santa Cruz Biotechnology, Santa Cruz, CA) primary antibodies followed by incubation with secondary antibodies labeled with horseradish peroxidase. Antigen-antibody complexes were detected with a chemiluminescence reagent kit (Thermo Scientific, Pittsburgh, PA), and data were acquired using an Azure C500 (Azure Biosystems, Dublin, CA). Western blot data were assessed using Image Studio Lite software.
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2

Protein Expression Analysis of Fibrosis Markers

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The protein levels of α-SMA, COL1A1, Smad2, p-Smad2, PED7A, PED4A, PKA, p-PKA, total Ras-proximate-1 (Rap1), Guanosine-5′-triphosphate (GTP)-Rap1, and exchange protein directly activated by cAMP 1 (Epac1), cAMP-response element-binding protein (CREB) and p-CREB were examined by immunoblotting following the methods described before (Liu et al., 2018 (link)) using the antibodies listed below: anti-α-SMA (ab5694, Abcam), anti-COL1A1 (ab34710, Abcam), anti-Smad2 (ab40855, Abcam), anti-p-Smad2 (ab53100, Abcam), anti-PDE4A (ab14607, Abcam), anti-PDE4B (ab170939, Abcam), anti-PDE4C (ab170939, Abcam), anti-PDE4D (ab171750, Abcam), anti-PKA (BS-0520R, Woburn, MA, United States), p-PKA (ab75991, Abcam), anti-GTP-Rap1 (ab32373, Abcam), anti-Rap1 (ab14404, Abcam), anti-Epac1 (ab109415, Abcam), anti-CREB (ab31387, Abcam), anti-p-CREB (ab32096, Abcam), and anti-Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (ab8245, Abcam) and then with HRP-conjugated secondary antibody. Enhanced chemilumescent (ECL) substrates (Millipore, MA, United States) were used for signals visualization using GAPDH as an endogenous protein for normalization.
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3

Immunostaining of Epac1, Piezo2, and Serotonin in Colon Tissues

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The distal colon tissues and DRGs were fixed with 4% paraformaldehyde for 24 h, and cross-sections of the colonic tissues were obtained after being embedded in paraffin. The sections were stained with diaminobenzidine for 15 s. All sections were blocked with 5% goat serum and incubated with the primary antibody at 4°C overnight. The sections were then washed three times in phosphate-buffered saline (PBS) and incubated at room temperature with the secondary antibody for 1 h. For immunofluorescence analysis, the nuclei were counterstained with 4’,6‐diamino‐2‐phenylindole (DAPI). For primary antibodies, we used rabbit anti-Epac1 antibody (1:50, ab109415, Abcam, Cambridge, UK) or polyclonal rabbit anti−human Piezo2/FAM38B antibody (1:200, LS-C180179, LSBio, Seattle, USA) or serotonin antibody (1:200, sc-58031, Santacruz Biotech, Texas, USA). For secondary antibodies, we used goat anti-rabbit IgG H&L (HRP) (1:1000, ab205718, Abcam, Cambridge, UK), and goat anti-rabbit IgG H&L (Alexa Fluor® 488) (1:1000, ab150077, Abcam, Cambridge, UK). The samples were then viewed under a fluorescence microscope (Olympus, Japan).
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4

Western Blot Analysis of Synaptic Proteins

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Standard western blot techniques were used (Criterion Gel System,
Bio-Rad, Hercules, CA, 4–15% or 15% gradient gels).
Equal volume of conditioned medium or cell lysate as appropriate was tested and
normalized to homogenate protein concentration (for medium) or GAPDH (for
lysate). Primary antibodies used include: rabbit polyclonal antibody for BDNF
(sc20981; Santa Cruz Biotechnology, Santa Cruz, CA, USA), rabbit polyclonal
antibody for TrkB (ab33655; Abcam, Cambridge, MA, USA), rabbit monoclonal
antibody for Epac1 (ab109415; Abcam), rabbit polyclonal antibody for Epac2
(ab124189; Abcam), rabbit polyclonal antibody for SNAP25 (ab5666; Abcam), rabbit
monoclonal antibody for SNAP47 (ab172609; Abcam), rabbit monoclonal antibody for
GAPDH (14C10;Cell Signaling Technology, MA, USA), and monoclonal antibody for
B-actin (ab5316; Abcam). Fluorescent secondary antibodies were used from Li-Cor
Biosciences (Lincoln, Nebraska, USA). Concentration of primary and secondary
antibody was used per manufacture’s recommendation. Protein expression
was determined as relative fluorescence compared to housekeeping protein.
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5

Quantitative Protein Expression Analysis

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The colonic tissues and DRGs were homogenized with RIPA lysis buffer. After cooling in an ice-water bath, the tissues were immediately centrifuged at 10000 rpm and 4°C for 10 minutes, and the supernatant was removed for testing. Enhanced BCA Protein Assay Kit (P0010) was used to measure protein concentrations. Equal amounts of protein were separated by SDS-PAGE and transferred to PVDF membranes. The membranes were blocked with 5% non-fat milk for 1 h at room temperature before being probed with rabbit anti-Epac1 antibody (1:1000, ab109415, Abcam, Cambridge, UK) or polyclonal rabbit anti−human Piezo2/FAM38B antibody (1:1000, LS-C180179, LSBio, Seattle, US) or rabbit anti-HTR3A antibody (1:500, 10443-1-AP, Proteintech, Chicago, USA) at 4°C overnight. After washing the membranes, they were subsequently incubated with goat anti-rabbit IgG (H+L) HRP (1:5000, S0001, Affinity Biosciences, Jiangsu, China) at room temperature for 1 h. Protein expression was quantified using Image J (National Institutes of Health, Bethesda, Maryland, USA).
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