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Zebron zb 5ms

Manufactured by Phenomenex
Sourced in United States

The Zebron ZB-5ms is a gas chromatography (GC) column designed for the separation and analysis of a wide range of organic compounds. It features a 5% phenyl-95% dimethylpolysiloxane stationary phase, which provides excellent peak resolution and inertness. The column is suitable for a variety of applications, including the analysis of environmental samples, pharmaceuticals, and food and flavor compounds.

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9 protocols using zebron zb 5ms

1

CO2-Mediated Reductive Amination Optimization

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The reaction was conducted in a 10 mL glass pressure reactor. Sodium borohydride (1.5 mmol), amine (1 mmol), solvent (0.5–2 mL), and catalyst (1–5 mol%) were added to the reactor in the desired quantities. Once prepared, the reactor was pressurized with carbon dioxide to a pressure of 5 bar.
The reactor was then heated with constant stirring at either 30 or 80 °C for a desired reaction time. After reaching the reaction time, the reactor was cooled down, and the organic products were extracted using 15 mL of ethyl acetate (3 × 5 mL extractions).
The extracted products were subsequently analyzed using GC-FID (Gas Chromatography-Flame Ionization Detector) and GC-MS (Gas Chromatography-Mass Spectrometry), using a Shimadzu QP2010SE instrument (Column: Zebron ZB-5ms (30 m; 0.25 mm) Phenomenex). Substrate conversion and product yields were calculated from the surface areas of the corresponding signals, assuming that the sum of the areas 1a + 2a + 3a = 100%. Moreover, nuclear magnetic resonance (NMR) spectroscopy analysis was performed on a Bruker 500 MHz spectrometer, utilizing CD3CN (at 1.94 ppm) as the deuterated solvent.
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2

Extracting and Quantifying TNT Degradation

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Cultures of T. viride were homogenized in an explosion-proof blender with 50 mL of acetone. This was left to stand for 15 min, followed by filtration through filter paper [58 (link),59 ]. Filtrates were extracted in a separating funnel with 100 mL of methylene chloride. Organic fractions evaporated overnight and were re-suspended in 5 mL of methylene chloride, and stored at −20 °C. At least four replicate cultures per fungus were analyzed. The extraction method used was designed to recover precipitated TNT, since TNT was added at 50 and 100 ppm [59 ].
A Thermo Scientific™ UltraFast TRACE GC with a Thermo electron-impact ionization (EI) TSQ Quantum™ Triple Quadrupole Mass Spectrometer (Waltham, MA, USA), equipped with a Phenomenex Zebron ZB-5MS (5 m × 0.25 mm i.d. × 0.25 µm film thickness or equivalent) column (411 Madrid Avenue, Torrance, CA, USA), was used in this protocol to separate and quantify TNT and its degradation products in the concentrated organic fractions. Organic culture extracts were analyzed by GC–MS, as previously reported [60 (link),61 (link)], at different dilutions (10, 25, 50, 100, 250, 500, 1000, and 2000 ng/mL).
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3

Quantitative Analysis of Insect Pheromones via GC-MS

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A gas chromatograph (Trace 1300 GC, Thermo Scientific, Bremen, Germany) hyphenated with a quadrupole mass spectrometer (TSQ 8000 Evo, Thermo Scientific) was used for the study. Hydrocarbons were separated on a capillary column (30 m × 0.25 mm I.D. with 0.25 mm film thickness, Zebron ZB-5ms, Phenomenex) using the following temperature program: initial temperature 50°C held for 3 min, ramped to 150°C at 5°C/min, ramped to 300°C at 15°C/min, and held for 2 min. Helium was used as a carrier gas at a constant flow of 1 mL/min. Injections of 2 μL of eggs’ extracts were made in a splitless mode. The injection port and transfer line temperature were kept at 250°C, and the ion source temperature set at 200°C. Ionization was done by electron impact (EI, 70 eV), and acquisition performed in Full Scan mode in the mass range 50–550 m/z (scan time 0.2 s). Each of the standard solutions of pheromones at 0.1 mg/mL in hexane were injected and imported in the NIST databases of EI mass spectra. Identification of hydrocarbons was done using XCalibur (Thermo Scientific) and NIST 14 library. The total ion current (TIC) MS was integrated, and the percent of peak area (compared to the total peak area) calculated for each of the four pheromones (cVA, 7-T, 7,11-HD, and 7,11-ND) identified.
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4

Aroma Volatile Compounds Analysis by ITEX-GCMS

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The extraction of aroma volatile compounds was performed through the in-tube extraction technique (ITEX) and the analysis was carried out on a GCMS QP-2010 gas chromatograph-mass spectrometer instrument (Shimadzu Scientific Instruments, Kyoto, Japan) as described in our previous works [77 (link),78 (link)]. Briefly, 3 g of each sample was introduced into a headspace vial of 20 mL, incubated for 20 min at a temperature of 60 °C, and the volatile compounds in the gas phase were absorbed through a fiber syringe (ITEX-2TRAPTXTA, Tenax TA 80/100 mesh) and directly desorbed into the GC-MS injector.
A Zebron ZB-5MS (Phenomenex) capillary column was used for the separation of the volatile compounds with helium as the carrier gas, a split ratio of 1:5, and a flow rate of 1 mL/min. The chromatographic column program was as follows: 35 °C (for 5 min) rising to 155 °C with 7 °C/min and then heated to 260 °C with 10 °C/min and held for 5 min. NIST27 and NIST147 mass spectra libraries were used for identifying the spectra of the reference compounds and checked by comparison with retention indices drawn from www.pherobase.com or www.flavornet.org [79 ,80 ]. The peaks that were identified at least in two of the three total ion chromatograms (TIC) were considered in calculating the total area of peaks (100%) and the relative areas of the volatile compounds [44 (link)].
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5

Comprehensive Metabolite Profiling by GC-MS

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A TRACE gas chromatograph [18 (link)] with an ISQ™ mass spectrometer (MS) from Thermo Fisher (Waltham, MA, USA) was used. The chromatographic separations were conducted on a Zebron™ ZB-5MS (30 m × 0.25 mm i.d., 0.25 µm film thickness) from Phenomenex (Torrance, CA, USA). Helium at a flow rate of 1.43 mL/min was the carrier gas. The inlet temperature was 250 °C, the split ratio was 50:1, and the injection volume was 1 μL. The oven temperature was held for 4 min at 60 °C; then it was increased to 280 °C at a rate of 10 °C/min and held for 5 min; finally, it was ramped to 300 °C at a rate of 10 °C/min and held for 10 min. The following MS settings were used: m/z: 50 to 350 amu; ionization energy: 70 eV; transfer line temperature: 320 °C; and source temperature: 230 °C. The linear retention indices were determined for each peak using a C8–C20 standard mixture of n-alkanes and compared with those of the literature. Furthermore, the recorded mass spectral information was compared with that from the NIST11 database. All measurements were performed in triplicate.
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6

GC-MS Analysis of Cuticular Hydrocarbons

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Chemical trail and control extracts were concentrated to approximately 10 µl under gentle helium flow, and 2 µl were analysed by GC/MS. All injections were performed on a Clarus 600 GC/MS apparatus (Perkin Elmer Inc., Wellesley, PA, USA) equipped with a 30 m × 0.25 × 0.25 fused-silica capillary column (Zebron ZB-5MS, Phenomenex Inc., Torrance, CA, USA). Extracts were injected in splitless mode with the oven programmed at 100°C for 1 min, raised at 10°C min−1 up to 180°C, maintained for 1 min and then 5°C min−1 up to 280°C with 20-min hold. Injector temperature was set at 250°C and helium at 1 ml min−1 was used as carrier gas. The detection was performed in EI mode at 70 eV with ionization source and the transfer line set at 180°C and 250°C, respectively. Scan mode was employed (m/z 35–500), and tentative identification was based on retention indices according to alkane standards and diagnostic ions reported in the literature, as there is no commercial sources for these cuticular hydrocarbons [35 (link)–39 (link)].
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7

Analyzing Essential Oil Composition and Phytoncide Feed Additive

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Phenomenex Zebron ZB-5ms (dimension: 30 meter×0.25 mm×0.25 μm); injection: split 50:1, heater 255°C, injection volume 1.0 μL, carrier gas: helium 1.0 mL/min; oven program: 40°C to 300°C, 5/min; detector: MS System, heater 280°C.
The main components of the essential oil were gamma-Terpinene (26.8%), dl-Limonene (19.6%), beta-Pinene (16.2%), and Isolongifolene (4.2%) (Table 2). Phytoncide feed additive consists of rice bran 60% and corn grit 40% as excipients. Phytoncide oil was mixed with the vehicle at a 10% concentration and it was added to the basal diet at a final concentration of 0.016% by top dressing. The control group was fed the same amount of added the vehicle (not included phytoncide oil).
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8

GC-MS Analysis of Organic Compounds

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The analyses were performed on a TRACE gas chromatograph (GC) coupled to an ISQ™ mass spectrometer (MS) from Thermo Fisher (Waltham, MA, USA). The column was Zebron™ ZB-5MS (30 m × 0.25 mm i.d., 0.25 µm film thickness) from Phenomenex (Torrance, CA, USA); Carrier gas—helium; flow rate—1.43 mL/min; inlet temperature—250 °C; split ratio—50:1; injection volume—1 μL. The oven temperature was programmed as follows: 4 min held at 60 °C; then ramped up to 280 °C at a rate of 10 °C/min and held at 280 °C for 5 min; then ramped to 300 °C at 10 °C/min and held at 300 °C for 10 min. The MS was set in full scan mode from 50–350 amu, with the following parameters: ionization energy—70 eV; source temperature—230 °C; transfer line temperature—320 °C. Linear retention indices (LRI) were calculated for the individual compounds using a standard mixture of C8–C20 n-alkanes. The compounds were identified by comparing their mass spectra with those from the NIST 11 Mass Spectra Library and their LRI with literature data. Each analysis was performed in triplicate.
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9

Quantification of Fatty Acid Compounds via GC-TOFMS

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The technique was used for initial identification of analytes by comparing their retention characteristics and mass spectra with those of synthetic standards and for quantification of the FA-derived compounds. The following conditions were employed using a 6890N gas chromatograph (Agilent Technologies) coupled to a Pegasus IV D time-of-flight (TOF) mass selective detector (LECO Corp.): helium carrier gas, 250°C injector temperature, 1 mL.min−1column flow, modulation time of 4 s (hot pulse time 0.8 s, cool time 1.2 s), modulator temperature offset of +20°C (relative to secondary oven) and secondary oven temperature offset of +10°C (relative to primary oven). Zebron ZB-5ms (30 m × 250 μm I. D. × 0.25 μm film thickness, Phenomenex) was used as a non-polar primary column and BPX-50 (1.5 m × 100 μm I. D. × 0.10 μm film thickness, SGE) was used as a more polar secondary column. The primary oven temperature program was as follows: 100°C (1 min), then a single ramp to 320°C at a rate of 4 °C.min−1 with a final hold for 5 min at 320°C.
The mass selective detector was operated in electron ionization mode (electron voltage −70 V) with a transfer line temperature of 260°C, ion source temperature of 220°C, 100 Hz acquisition rate, mass scan range of 30–600 u and 1800 V detector voltage. ChromaTOF software (LECO Corp.) was used to collect and analyze the data.
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