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Snarf 5 am

Manufactured by Thermo Fisher Scientific
Sourced in United Kingdom

SNARF-5-AM is a fluorescent pH indicator designed for measuring intracellular pH levels. It exhibits a pH-dependent shift in its emission spectrum, allowing for ratiometric measurements of pH. The core function of SNARF-5-AM is to provide a reliable tool for researchers to monitor and analyze pH changes within cellular environments.

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2 protocols using snarf 5 am

1

Fluorescent Dye Characterization Protocol

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The inhibitor AR-C155858, tetrodotoxin citrate (TTX) and sulforhodamine 101 (SR101) were acquired from Tocris, Wiesbaden-Germany, Abcam Biochemicals, Cambridge, UK, and Baseclick, Tutzing, Germany, respectively. Fluo-4-AM, SNARF-5-AM, and pluronic acid were obtained from Invitrogen. The fluorescent dyes, pluronic acid, AR-C155858 and SR101 were dissolved in DMSO.
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2

Astrocyte Optogenetic Calcium Imaging

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Primary cultures of Wistar rat pups (p2) cerebral astrocytes (adapted from62 ) transduced with AVV.sGFAP.optoβ2AR, seeded onto coverslips, were loaded with either Rhod-2AM (30 μM; Invitrogen, UK) or SNARF-5AM (30 μM; Invitrogen, UK) 1 h before visualization. Rhod-2AM was used as a Ca2+ indicator to avoid spectral interference with EGFP. The pH indicator SNARF-5 responds to acidification with a shift in its emission towards shorter wavelengths. Light was collected from two channels set to 550–580 nm (channel 1) and 620–700 nm (channel 2). Ratio of channel 1: channel 2 is indicative of a pH change.
Imaging experiments were carried out at 34 °C under continuous superfusion (150 ml h–1) with pH 7.4 HBS buffer in a tissue chamber mounted on a Leica-SP confocal microscope. Astrocytes were imaged in time-lapse mode (0.5 Hz) using the 543 nm laser line to excite Rhod-2 and SNARF-5. To activate optoβ2AR- or ChR2-transduced astrocytes, a 470 nm light-emitting diode-illumination system (Rapp Optoelectronic) coupled to the microscope via the epifluorescence port was employed. Changes of [Ca2+]i in individual cells were assessed by changes in relative fluorescence intensity (F/F0).
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