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Bovine CD8+ T Cell Immunophenotyping

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Multi-colour flow cytometry analysis was performed as described previously [19 (link)]. Briefly, cells were incubated with a cocktail of monoclonal antibodies against rabbit CD4 (IgG2a, KEN-4), CD8 (IgG1, 12C.7) and IgM (IgG1, NRBM) on ice for 10 min. Cells were washed and further incubated for 10 min on ice with isotype-specific phycoerythrin (PE)-conjugated rat anti-mouse IgG1 (A85-1, BD) and biotinylated rat anti-mouse IgG2a (R19-15, BD) antibodies. After a third wash, cells were incubated with fluorescein isothiocyanate (FITC)-conjugated anti-rabbit T cells (KEN-5), washed with allophycocyanin (APC)-conjugated streptavidin (BD), and suspended in 7-AAD. Antibodies were from AbD-Serotec. Bovine CD8+ T cells were identified as previously described [18 (link)], and dead cells detected with BD Horizon Fixable Viability Stain 450 (BD biosciences). Data were acquired using a Fortessa X20 flow cytometer (BD) and analyzed using Flowjo v10.0.7 (Treestar).
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Serum Immunoglobulin and Polyreactivity Analysis

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Total serum Ig was measured by sandwich ELISA. High-binding assay plates were coated overnight with 50 µl capture antibody (Bethyl Labs) diluted in carbonate buffer. Plates were washed with wash buffer (0.1% Tween20 in PBS) and blocked for 2 h at 37°C with 50 µl of 5% BSA and 0.05% sodium azide in PBS. After washing, 50-µl mouse serum samples (diluted in 1% BSA and 0.1% Tween20 in PBS) were added and incubated for 2 h at 37°C. Plates were washed and incubated with alkaline phosphatase–conjugated detection antibodies (Bethyl Labs) for 1 h. Plates were washed and incubated with 100 µl phosphatase substrate solution (Sigma) for 10–15 min, and absorbance was measured at 405 nm.
Polyreactivity was assessed by performing ELISA as previously described (Gitlin et al., 2016 (link)) using cardiolipin (Sigma), LPS (Sigma), human insulin (Sigma), double-stranded DNA (Sigma), and KLH (Sigma).
SRBC-specific IgM, IgG3, and IgG1 in the sera were measured by flow cytometry–based MFIs (median fluorescence intensity) of anti-IgM (Clone II/41; eBioscience), anti-IgG3 (Clone R40-82; BD PharMingen), and anti-IgG1 (A85-1; BD Biosciences) binding to SRBC-bound serum antibodies using a method described previously (McAllister et al., 2017 (link)).
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Analyzing Immune Cell Populations by Flow Cytometry

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Single-cell suspensions were prepared from lymphocytes of thymus (T), bone marrow (BM), spleen (Spl), and lymph node (LN) from mice of the described genotypes and ~1 × 105 cells in 1× PBS were stained for 15 min at RT using fluorescence-conjugated antibodies and analyzed by flow cytometry60 (link). The following antibodies were used: FITC-Cd11b (1:200, M1/70, BD Pharmingen, 553310), APC-Ly-6G/Ly-6C (Gr-1) (1:200, RB6-8C5, Biolegend), PE-IgM (1:400, SouthernBiotech, 1020-09), PE-CD4 (1:200, GK1.5, BD Pharmingen, 553730), FITC-CD8a (1:200, 53-6.7, Biolegend), PE-Cyanine5-CD3e (1:200, 145-2C11, Invitrogen, 15-0031-63).
For CSR assay, single-cell suspensions of spleen cells were sorted with CD43 magnetic beads (MACS, Miltenyi), and CD43- B cells were cultured at a density of 5 × 105 cells per ml in RPMI medium supplemented with 15% FBS and 25 ng ml−1 of IL-4 (R&D) and anti-CD40 (BD Biosciences). Cultured cells were maintained daily at a density of 1 × 106 cells per ml. Cells were collected every day up to day 4.5 and were stained with FITC-conjugated IgG1 (1:200, A85-1, BD Pharmingen, 553443) and PE-Cyanine5-conjugated B220 (1:200, RA3-6B2, BD Pharmingen, 553091). Flow cytometry was performed on a FACSCalibur flow cytometer (BD Biosciences) and data were processed using FlowJo software package.
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Quantifying Serum Antibody Levels

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Antibody titers of SRBC-specific Ig and total Ig in serum were measured by ELISA, similar to previously reported [26 (link)]. For anti-SRBC Ab analysis, 96 well Nunc-Immuno plates were coated with SRBC membrane protein overnight at 4°C. For anti-mouse IgA, anti-mouse total IgG or anti-mouse IgM Abs, directly peroxidase-conjugated secondary Abs (Sigma-Aldrich) were used. For analysis of IgG1 (A85-1, BD Biosciences), IgG2b (R12-3, BD Biosciences), IgG2c (Abcam) and IgG3 (R40-82, BD Biosciences), biotin-labeled secondary Abs were used along with Avidin-HRP (BD Biosciences). For total Ig isotype analysis, 96 well Nunc-Immuno plates were coated with anti-Ig kappa light chain Ab (187.1, BD Biosciences) diluted in PBS overnight at 4°C. Wells were blocked with 10% FCS and diluted serum was added and incubated at room temperature for 2 h.
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5

Characterization of Antigen-Specific B-Cell Responses

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Reagents were purchased from Biolegend, BD, eBioscience, or Invitrogen except for 5D2 and peptide MHC class I-monomers (pMHC class I-monomers, provided by the NIH Tetramer Core Facility, H-2K(b)/SSIEFARL and H-2K(d)/SYIGSINNI). pMHC-monomers and 5D2 were fluorochrome-conjugated using protein labeling kits per the manufacture's instructions (Invitrogen). For pMHC-monomer and intracellular-IgG+ staining, cell surface binding of these reagents was blocked with purified IgG1 and Fc-block (included with cell surface staining). Cells were then fixed with BD Fix/Perm solution. Intracellular staining for pMHC-monomers and anti-IgG subclass antibodies (FITC-conjugated IgG 1, A85-1, IgG2a, R19-15, IgG2b R12-3, IgG3 R40-82, all from BD) was performed in 0.25% saponin, 5% rat serum, in PBS at RT for 1 hr. Sample data were recorded on a LSRII (BD). Counts of BM cells were adjusted for total BM population by multiplication by 14.3 (16 (link)). Analyses were performed using FlowJo software (TreeStar). Gating for all flow cytometry plots was for lymphocytes off a forward/side scatter gate and doublet discrimination. Additional gating is indicated at the top of individual plots.
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