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5 protocols using microrna mimic

1

Luciferase Assay for miR-29b Targeting

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Cells were seeded into 96-well plates and co-transfected using TransIT-X2 (Mirus, Madison, WI, USA) with microRNA mimic (Thermo Scientific) or Anti-miR (Thermo Scientific) along with 50 ng of pMirTarget (Origene, Rockville, MD, USA) housing the 3′UTR sequence of TET1 that contained either a wild-type or mutant version of the miR-29b binding site. Luciferase and RFP expression were measured using the Steady Glo Luciferase kit (Promega, Madison, WI, USA) and a Tecan microplate reader.
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2

Quantifying 5-Hydroxymethylcytosine in Cells

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Cells were seeded into a clear bottom, black wall 96-well plate (then transfected with microRNA mimic (Thermo Scientific) Anti-miR (Thermo Scientific), or 20 nm siRNA (Dharmacon) using RNAiMAX (Invitrogen) or treated with drug. Cells were fixed with 3.7% formaldehyde, permeabilized in 0.5% Triton-X-100, denatured with 2 n HCl and neutralized with 100 mm Tris-HCl (pH8.5), then blocked with 5% BSA/0.1% Triton X-100 before probing with an antibody against 5-hydroxymethylcytosine (5-hmC) (Active Motif, Carlsbad, CA, USA) overnight at 4 °C. Following washing in phosphate-buffered saline-Tween 0.05%, cells were incubated with a secondary antibody conjugated to Alexa-Fluor-488 (Invitrogen) and Hoescht (Invitrogen) before washing and imaging using a × 10 objective on the Cellomics Cell Insight. An algorithm measuring the nuclear fluorescence intensity was used for analysis.
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3

Modulating QPRT expression in IGROV-1/DDP cells

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IGROV-1/DDP cells were transfected with si-QPRT (50 nM), negative control siRNA (si-NC; 50 nM), pcDNA3.1 empty plasmid (150 nM), pcDNA3.1-QPRT (150 nM), microRNA mimic (miR-mimic; 30 nM), microRNA inhibitor (miR-inhibitor; 30 nM), scrambled miR control (miR-NC; 30 nM), or co-transfected with si-QPRT (50 nM) and miR-inhibitor (30 nM) using Lipofectamine® 3000 (Thermo Fisher Scientific, Inc.) for 48 h at 37˚C in a humidified incubator with 5% CO2. pcDNA-3.1 was purchased from Clontech Laboratories, Inc. pcDNA3.1-QPRT were synthesized by GenePharma Technology Co., Ltd, and the miR-654-3p mimic and inhibitor were purchased from Guangzhou RiboBio Co., Ltd. The sequences of si-QPRT sense, 5'-CUACUUGUGUUAUCUGUAAAU-3' and antisense, 5'-UUACAGAUAACACAAGUAGUU-3') and si-NC sense, 5'-UUCUCCGAACGUGUCACGUTT-3' and antisense, 5'-ACGUGACACGUUCGGAGAATT-3') were designed by DSIR (http://biodev.extra.cea.fr/DSIR/DSIR.html), a tool for siRNA (19 or 21 nt) and shRNA target design based on the publication by Vert et al (27 (link)) and synthesized by GenePharma Technology Co., Ltd. Except for the IGROV-1 cells, which were cultured without DDP, the untransfected IGROV-1/DDP and transfected IGROV-1/DDP cells were maintained in media containing 8 µM DDP.
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4

Transfecting H4 cells with miRNA mimics

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MicroRNA mimics (from Ambion-Life Technologies, Ambion-Grand Island, NY, USA) were used referent to hsa-miR-30c-5p (MIMAT0000244), hsa-miR-200c-3p (MEVIAT0000617), and ‘Negative Control #1’. For each, 100 nM was used to transfect H4 cells (Arnstein et al. 1974 (link)) using RNAiMAX (Life Technologies) according to the manufacturer’s instructions. Cells were harvested 48 h post transfection, and RNA was isolated and RT-qPCR performed as described above. Three independent experiments were performed with five replicates in each experiment, for a total of 15 biologic replicates per miRNA transfected.
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5

Transfection of HEK293T cells

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The Human embryonic kidney immortalized 293 cells (HEK293T) were grown in Dulbecco’s Modified Eagle’s Medium (DMEM, Invitrogen), supplemented with 10% of heat-inactivated Fetal Bovine Serum (FBS) and penicillin/streptomycin. All cells were incubated at 37°C in a humidified chamber supplemented with 5% CO2. Transfection of HEK293T cells was performed using jetPRIME Transfection Reagent (Polyplus transfection) according to the manufacturer’s protocol. Cells were transfected with 50 pmol of either miRIDIAN Dharmacon microRNA Mimics (miR-101a or negative control cel-miR-67) or Ambion small-interfering RNA (siAGO2, siPUM1 or scramble-siRNA control). For overexpression studies, the full cDNA of PUM1 (4635nt) was amplified by Platinum Taq DNA Polymerase High Fidelity (Invitrogen) and cloned into a mammalian expression vector termed pcDNA3.1(+) (Invitrogen). Cells were transfected with 0.5μg of either pcDNA3.1(+)-PUM1 or control pcDNA3.1(+).
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