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4 protocols using biotinylated ib4

1

Retinal Endothelial Cell Isolation Protocol

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Retinas were dissected, minced, and incubated in Dulbecco modified Eagle medium (4.5 g/L glucose with L-glutamine) containing 200 U/mL collagenase IV (Invitrogen) and 2.4 U/mL Dispase (17105–041; Life technologies) for 30 minutes at 37°C on agitation. To obtain a single-cell suspension, cells were first passed through a 25-G needle, then filtered through a cell strainer (70-μm pore size; BD Falcon) centrifuged at 200g for 5 minutes at 4°C. Cells were then resuspended in cold washing buffer (0.1% BSA, 2 mmol/L EDTA pH 7.4 in PBS), and incubated with biotinylated iB4 (1:12.5; Vector Laboratories) for 30 minutes on ice with agitation and after that incubated with streptavidin-coupled magnetic beads (Dynabeads MyOne Streptavidin T1, 656.02; Dynal Biotech ASA) for 30 minutes on ice with gentle agitation. The beads were separated from the solution using a magnetic particle concentrator (Dynal MPC-S; Invitrogen), and the cells in the supernatant were kept as the non-EC fraction. Non-EC fraction and washed beads were pelleted at 200g for 5 minutes, and the supernatant was removed. The purified ECs and non-ECs were snap-frozen in liquid nitrogen and stored at −80°C until use.
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2

Quantitative Analysis of Adipose Tissue

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The samples of epididymal white adipose tissue (eWAT) as visceral adipose tissue and subcutaneous white adipose tissue (sWAT) were fixed with 4% paraformaldehyde, and embedded in paraffin. They were sectioned into 7-mm thick slices that were stained with hematoxylin and eosin for microscopic examination. The average cell area and lipid droplets per cell were measured using the ImageJ software according to the method described in the previous study [19 ]. After deparaffinization using xylene and ethanol, immunolocalization was performed in the paraffin sections of eWAT and sWAT. Primary antibodies (4 °C, 12 h) and secondary antibodies (room temperature, 1 h) were applied to the slides upon dilution with PBS. Primary antibody used was Rabbit anti-UCP1 (Abcam, 1:250), and secondary antibodies used were Alexa 488-conjugated (Invitrogen) and HRP conjugated (DAKO). Biotinylated IB4 (Vector Labs, 1:50) was used with Alexa 488-conjugated streptavidin. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Roche). Images were acquired using a BZ-X710 fluorescence microscope (Keyence, Osaka, Japan). For quantification, at least ten 10 × view fields per sample were analyzed. UCP1 expression in the white adipose tissues were quantified through measuring the cumulative pixel intensity in multiple fields of view using the ImageJ software.
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Immunostaining of Neuronal Markers

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Tissue was immunostained as described previously (Bráz et al., 2012 (link)). Antibodies used included ATF3 (rabbit, 1:2 k, Santa Cruz Biotechnology), Fos (rabbit, 1:5 k, Oncogene), Iba1 (rabbit, 1:1 k, Wako), NeuN (mouse, 1:5 k, Sigma), β-Gal (chicken, 1:10 k, Abcam), TRPV1 (guinea pig, 1:5 k, generous gift of the David Julius lab), NF200 (mouse, 1:20 k, Sigma), CGRP (mouse, 1:10 k, Sigma), tyrosine hydroxylase (rabbit, 1:5 k, Millipore), and biotinylated IB4 (goat, 1:500, Vector Labs). Fluorescent secondary antibodies were used at a 1:1 k dilution; streptavidin-conjugated fluorophore was used at 1:5 k.
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4

Intragastric Recombinant N1 Decoy Injection in Mice

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C57BL/6 mice postnatal day 1 (P1) pups were injected intragastrically with 12.5 mg/kg of recombinant N110-14Fc decoy or Fc for three days (P1-P3). Eyes were isolated at P5 and were fixed in 4% paraformaldehyde (Thermo Fisher Scientific) for 1 h at 4 °C on a nutator. Following fixation, eyes were washed with 1 × PBS solution. Retinas were dissected and permeabilized in 1 × PBS containing 1% BSA (Fisher Bioreagents) and 0.5% Triton X-100 (Fisher Bioreagents) overnight at 4 °C on a nutator. Samples were then immunostained in PBLEC (5% Triton X-100, 1 M MgCl2, 1 M CaCl2, and 1 M MnCl2 in 1 × PBS) overnight at 4 °C with Biotinylated IB4 (1:50; Vector Laboratories, B-1205) and anti-α-SMA-FITC (1:200; MilliporeSigma, F3777). IB4 was detected with streptavidin-conjugated Alexa Fluor 647 (Invitrogen). Immunostained retinas were postfixed with 4% formaldehyde and mounted in Vectashield (Vector Laboratories). Whole-mount retina images were acquired using Leica Dmi8 Platform. All images were analyzed using ImageJ (NIH).
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