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Neurotrace 530 615

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NeuroTrace 530/615 is a fluorescent stain used for labeling neurons in fixed tissue samples. It binds to Nissl substance in the neuronal cytoplasm, allowing for the visualization of neuronal cell bodies and processes. The product is designed for use in fluorescence microscopy applications.

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15 protocols using neurotrace 530 615

1

Visualizing Neuronal Activation via cFos

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To assess neuronal activation, 2 h after the start of the last TD test session mice were deeply anesthetized with isoflurane and transcardially perfused with a paraformaldehyde solution (4% in 0.1 M phosphate buffer, pH 7.4). Brains were collected and sectioned on a vibrating microtome (VT1200S, Leica, Germany). cFos immunostaining was performed using standard procedures similar to Bertran-Gonzalez et al. (2008 (link)). Free-floating brain sections (50 μm) were incubated with a blocking and permeabilization solution (10% donkey serum, 0.3% Triton X-100 in PBS) for 2 h and then incubated overnight at 4°C with the cFos primary antibody (Cell Signaling Technologies, 1:300 dilution). Sections were rinsed in PBS, 0.1% Tween-20 and incubated for 2 h with Alexa 488 conjugated donkey anti rabbit secondary antibody and Neurotrace 530/615 (Life Technologies). Neurotrace neuronal labeling was used to identify the neuroanatomical regions of interest. Sections were rinsed in PBS before mounting with Prolong Gold (Life Technologies).
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2

Fluorescent Labeling of Brain Sections

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Brain sections were permeabilized in phosphate-buffered saline (PBS) with 0.1% Triton X-100 (PBS-T) for ten minutes at room temperature followed by washes in PBS. Sections were incubated in NeuroTrace 530/615 (Life Technologies, cat# N21482) (1:200 in PBS) for twenty minutes at room temperature and washed once with PBS-T and twice with PBS. DAPI (1:10,000 in PBS) was added for 15 minutes, followed by three PBS washes. Sections were mounted using Prolong Gold mounting media.
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3

Fluorescent Labeling of Brain Sections

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Brain sections were permeabilized in phosphate-buffered saline (PBS) with 0.1% Triton X-100 (PBS-T) for ten minutes at room temperature followed by washes in PBS. Sections were incubated in NeuroTrace 530/615 (Life Technologies, cat# N21482) (1:200 in PBS) for twenty minutes at room temperature and washed once with PBS-T and twice with PBS. DAPI (1:10,000 in PBS) was added for 15 minutes, followed by three PBS washes. Sections were mounted using Prolong Gold mounting media.
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4

Quantifying Neuronal Activation via cFos Staining

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At the end of the last TD test session under Stress condition, 6 mice in each genotype were randomly selected for cFos immunostaining, which was performed using standard procedures (M. Buhusi et al., 2016 (link)), using a rabbit anti cFos primary antibody (Cell Signaling Technologies, Danvers, CA, Antibody Registry AB_2247211, 1:300 dilution), Alexa488-conjugated goat anti rabbit secondary antibody and NeuroTrace 530/615 (Life Technologies, Carlsbad, CA). NeuroTrace neuronal labeling was used to visualize the regions of interest. A Zeiss LSM710 laser scanning confocal microscope was used for image acquisition. Neuronal activation was estimated by counting cFos-positive nuclei in corresponding areas in 2 sections / region of interest / mouse (OFC: bregma 2.10/2.34, PrL: bregma 1.78/2.10, Acb-shell and core: bregma 1.10/1.34, DS-med and lat: bregma 0.98/1.34) (Franklin & Paxinos, 2008 ), averaged over two independent observers unaware of genotype (inter-observer reliability r=0.36, p<0.01).
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5

Quantifying Neurons in Mouse Geniculate Ganglia

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Mice were perfused and geniculate ganglia were exposed by removing the brain and bone dorsal to the ganglia as described previously24 (link). The greater superficial petrosal and facial nerves were cut, and the ganglia were extracted by blunt dissection. In order to quantify the number of Thy1-GCaMP3-positive neurons per ganglia, fluorescent Nissl staining (NeuroTrace 530/615, Molecular Probes) was used to label neurons, and the ratio of Nissl-positive to GCaMP3-positive neurons determined; greater than 90% of all neurons are labeled by Thy1-GCaMP3 (n=6 ganglia). Ganglia were mounted in Vecta-shield mounting medium and imaged with a Zeiss 510 confocal microscope (Zeiss ×10, 0.45 NA microscope objective). For control KCl stimulations, dissected ganglia were submersed in imaging buffer (Hank’s Buffered Salt Solution with Ca2+ and 10 mM HEPES). Suture thread was used to mount the ganglia onto a coverslip within a custom imaging chamber. A depolarizing solution (potassium chloride, 500 mM) was applied to cells between washes with imaging buffer.
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6

Microglial Activation Visualization via Iba-1 IHC

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We performed immunohistochemistry of the ionised calcium-binding adaptor molecule 1 (Iba-1), an established molecular marker of activated microglia. The immunofluorescence procedure was previously described20 (link). After the ex vivo MRI acquisition, the brains were randomly selected and sliced into 50-µm thick frontal frozen sections on a cryostat. Immunohistochemistry was applied to every fourth section (assuming a 50-μm thickness and 150 μm apart). We used rabbit anti-Iba-1 polyclonal antibody (019–19741, Wako, Osaka, Japan) as the primary antibody (immersed for 5 days at 4 °C) and Alexa Fluor 488 labelled goat anti-rabbit IgG (1:1000) (Molecular Probes, Eugene, OR, USA) as the secondary antibody (immersed for 2 days at 4 °C). Neurotrace 530/615 (Molecular Probes, Eugene, OR, USA) was applied as a counterstain to mark the neurons. Then, fluorescent images for obtained areas from VBM were collected using a confocal laser-scanning microscope (LSM; 510 Meta, Carl Zeiss, Germany).
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7

Immunohistochemistry of Brain Slices

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Brain slices were washed twice in PBS and incubated with blocking solution (PBS with 10% FBS and 0,3% Triton X-100) for 1 h at room temperature. Then, tissues were incubated overnight at 4 °C with anti-ferritin primary antibody (LF03 5 μg/ml) diluted in blocking solution. Following 3 washes in PBS, cells were incubated with secondary antibody in PBS (donkey anti-mouse Alexa 488; Molecular Probes) for 90 min at room temperature. Tissues were also stained for NeuroTrace 530/615 (a neuronal marker, diluted 1:100 in PBS; Molecular Probes) and TO-PRO-3 (a nuclear marker diluted 1:1000 in PBS; Molecular Probes). All brain slices were mounted on glass slide using Fluorsave (Calbiochem) and acquired on confocal microscope (BioRad confocal).
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8

Quantifying Neurons in Mouse Geniculate Ganglia

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Mice were perfused and geniculate ganglia were exposed by removing the brain and bone dorsal to the ganglia as described previously24 (link). The greater superficial petrosal and facial nerves were cut, and the ganglia were extracted by blunt dissection. In order to quantify the number of Thy1-GCaMP3-positive neurons per ganglia, fluorescent Nissl staining (NeuroTrace 530/615, Molecular Probes) was used to label neurons, and the ratio of Nissl-positive to GCaMP3-positive neurons determined; greater than 90% of all neurons are labeled by Thy1-GCaMP3 (n=6 ganglia). Ganglia were mounted in Vecta-shield mounting medium and imaged with a Zeiss 510 confocal microscope (Zeiss ×10, 0.45 NA microscope objective). For control KCl stimulations, dissected ganglia were submersed in imaging buffer (Hank’s Buffered Salt Solution with Ca2+ and 10 mM HEPES). Suture thread was used to mount the ganglia onto a coverslip within a custom imaging chamber. A depolarizing solution (potassium chloride, 500 mM) was applied to cells between washes with imaging buffer.
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9

Neuronal Size Quantification in CA1

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To evaluate neuronal size, we stained coronal sections from these mice with NeuroTrace™ 530/615 (red fluorescent Nissl stain from Molecular Probe, Eugene, OR, USA) and DAPI. Images were obtained by a confocal microscope (FV1000, Olympus, Tokyo, Japan). Sizes of CA1 pyramidal neurons (more than 50 neurons from three mice) were measured by Image-J.
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10

Immunohistochemical Labeling of Retinal Wholemounts

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Dissected wholemount retinas or sections were incubated in 5% normal donkey serum in phosphate-buffered saline (PBS) with 1% Triton-X for three hours. They were then rinsed in PBS and incubated in primary antibodies diluted in PBS with 1% Triton-X for 72 hrs. Primary antibodies used in this study are listed in Table 1. In addition, Hoechst (Invitrogen, Eugene, OR; 1:1000), NeuroTrace 530/615 (ThermoFisher Scientific, Waltham, MA; #N21482, 1:500) and PNA lectin conjugated to Alexa Fluor 647 (ThermoFisher Scientific, Waltham, MA; #L32460, 1:500) were used and added to the solution of primary antibodies. Retinas were subsequently rinsed in PBS and incubated overnight in the secondary antibodies. All secondary antibodies were raised in donkey and conjugated to AlexaFluor dyes (Jackson ImmunoResearch Laboratories, West Grove, PA; 1:200). All steps were conducted under agitation at 4°C.
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