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Xmark microplate spectrophotometer

Manufactured by Bio-Rad
Sourced in United States, Canada, Japan

The XMark Microplate Spectrophotometer is a laboratory instrument designed for the analysis and quantification of samples in microplates. It provides accurate absorbance measurements across a wide range of wavelengths, enabling researchers to perform various spectrophotometric applications.

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228 protocols using xmark microplate spectrophotometer

1

Quantifying F2,6-BP in Tissue Samples

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Tissue F2,6-BP concentration was determined as previously described (Van Schaftingen, Lederer, Bartrons, & Hers, 1982 (link)). Briefly, samples of tissues were weighed and homogenized in NaOH (0.05 M). The resulting mixture was heated for 20 min at 80°C. After cooling, the samples were neutralized with 1M acetic acid in the presence of 20 mM Hepes, and then centrifuged. Samples were incubated at 37 °C for 5 min in the following assay mixture: 50 mM Tris, 5 mM Mg2+, 1 mM fructose-6-phosphate (Sigma #F3627), 0.15 mM NADH (Sigma #N4505), excessive PPi-dependent PFK-1 (enriched from potato tubers), 0.2U/mL aldolase (Sigma #A2714), 8U/mL triosephosphate isomerase (Sigma #T2507) and 1U/mL glycerol-3-phosphate dehydrogenase (Sigma #10127752001). After the 5 min pre-incubation time, 0.5 mM pyrophosphate was added to start the reaction, and the rate of change in OD340 nm every 30 seconds was followed for 5 min in a Bio-Rad xMark microplate spectrophotometer (Bio-Rad). Data are expressed as the fold change compared to the WT controls.
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2

Malic Acid Production in Yeast

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Small-scale cultivations were performed in 96-deep-well plates using SC⁻URALEU broth (pH 5) with either 15 g/L l-malic acid plus 5 g/L glucose (ratio of 3:1) or 15 g/L l-malic acid plus 1 g/L glucose (ratio of 15:1) as carbon sources. The transformants were precultured overnight in their respective media and absorbance was measured at 600 nm (with path length corrected for the volume) using a BIO-RAD xMark™ Microplate Spectrophotometer (BIO-RAD, Hercules, CA, USA). The inoculum volume for each transformant was standardized to an A600 of 0.5 and the transformants were cultivated at 30°C for 72 h in 96-deep-well plates containing 2 mL of either the 3:1 or 15:1 cultivation media. The plates were covered with a sterile Breathe Easier sealing membrane (allowing CO2, O2, and water vapour to permeate) (Sigma–Aldrich, St. Louis, MI, USA) and a sterile 2-mm glass bead in each well facilitated mixing at 600 rpm. Triplicate samples were taken every 24 h and frozen for HPLC analyses.
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3

Protein Quantification using BCA Assay

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Protein concentrations were analyzed with the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, USA). Optical densities were measured by a Bio-Rad xMark Microplate Spectrophotometer (Bio-Rad Laboratories, USA) at 562 nm. A standard curve was generated using a second order polynomial (quadratic) fit in GraphPad PRISM 8 (version 8.1.2, San Diego, USA). The protein content of each sample (exoEasy) or fraction (qEV, individual or pooled) was determined by extrapolating the measured optical densities to the obtained standard curve.
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4

Plasma Creatinine Measurement Protocol

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Plasma creatinine level was measured by using a LabAssayTM Creatinine assay kit (Fujifilm Wako Chemicals) according to the manufacturer's instructions. Briefly, plasma samples were deproteinized (sodium Tungstate and phosphoric acid) and centrifuged at 600 g for 10 min at room temperature. One hundred microliters of supernatant was then mixed with 50 µl of picric acid (22 mM) and 50 µl of NaOH (0.75 M) and incubated at 25–30°C for 20 min. The absorbance at 520 nm was then read within 30 min by a Bio‐Rad xMark microplate spectrophotometer (Bio‐Rad) and plotted against a standard curve. Data are expressed as mg/dl.
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5

Superoxide Quantification in Tissue Homogenates

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Superoxide is very chemically active and has a very short life time, thus it is almost impossible to be measured in vivo. To determine the effects of superoxide after treatment on wounds, we measured the ex vivo levels of SOD, CAT, and GPx to support the possibility that superoxide species is originally contained in the plasma or is synthesised during the plasma treatment. The liquid nitrogen‐preserved tissue was homogenised in 1 × PBS and the concentrations of antioxidants in tissue homogenates were measured according to the kit instructions (Elabscience Biotechnology Co., Ltd.). The results were read by BIO‐RAD xMark™ Microplate spectrophotometer (BIO‐RAD, California, USA).
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6

Cytotoxicity Assessment of Compounds

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The in vitro cytotoxicity was determined by means of (4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) method. In brief, HaCaT, 1BR3 cells were seeded in 96-well plates at an initial density of 1104 cells/well and allowed to attach. Next, the old medium was removed and a fresh one was added containing five concentrations (100 µM, 10 µM, 1 µM, 0.1 µM, and 0.01 µM) of the tested compounds 6 and 7 after which cells were incubated for 48 h. The control cells were treated with the same amount of DMSO, the highest concentration of DMSO present in the medium being 0.5%. A volume of 10 mL MTT reagent (5 mg/mL) was added in each well. During a 4 h contact period, the intact mitochondrial reductase converted and precipitated MTT as blue crystals. The precipitated crystals were dissolved in 100 mL of lysis solution provided by the manufacturer (Sigma-Aldrich). Finally, the reduced MTT was spectrophotometrically analyzed at 570 nm, using a microplate reader (xMark Microplate Spectrophotometer, Bio-Rad, Hercules, CA, USA). GI50 was calculated for each healthy cell line.
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7

Determination of Total Phenolic Content

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The determination of TPC was carried out using the Folin-Ciocalteu method [48 (link)]. Gallic acid was used as a standard and was prepared at concentrations of 0.0, 2.5, 5, 10, 25, 50, 100, 250 and 500 mg/L to obtain a standard curve. For the reaction, 20 µL of distilled water, samples or standard solutions were added to the wells of a 96-well microplate. Then 100 µL of 1:10 diluted Folin-Ciocalteu was added to the wells. An incubation period of 4 min was necessary for the oxidation of the phenolic compounds by the Folin reagent. Afterwards, 80 µL of 7.5% sodium carbonate was added to inactivate the reaction. The microplate was incubated in the microplate reader for 45 min, and the absorbance was measured at 765 ƞm with an xMark Microplate spectrophotometer (Bio-Rad, Mississauga, ON, Canada). TPC was expressed as mg gallic acid equivalent/g sample.
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8

Quantifying Total Flavonoid Content

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Total Flavonoid Content (TFC) was determined, according to Oomah, et al. [33 (link)]. The method consisted of mixing in a 96-well microtitration flat-bottom plate, 50 μL of the methanolic extract with 180 μL of distilled water, and 20 μL of a solution of 10 g/L 2-aminoethyldiphenylborate. The absorbance of the solution was measured with a spectrophotometer (xMark Microplate Spectrophotometer, BioRad, Osaka, Japan) at 404 nm after 15 min of reaction. Extract absorption was compared with a rutin standard (0 to 200 μg/mL). TFC was expressed as mg rutin equivalent per 100 g of dry matter (mg eq. rutin/g db).
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9

Clonogenic Survival Assay Protocol

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Clonogenic survival assays were conducted as previously described.
25 (link) At the endpoint, cells were fixed, stained with 0.5% crystal violet solution, and dissolved in 50% acetic acid. The optical density was measured at 570 nm using an xMark Microplate spectrophotometer (Bio‐Rad).
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10

ELISA for Serum Anti-N IgG Antibodies

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Serum IgG antibodies specific to N proteins were measured with an ELISA. Briefly, high-binding 96-well plates (Thermo Fisher Scientific, Waltham, MA, USA) were coated with purified recombinant N proteins, 100 ng per well, in a carbonate–bicarbonate buffer (pH 7.4) overnight at 4 °C. Then, the plates were blocked with 1% BSA in PBS (pH 7.4) for 40 min at 37 °C and washed 3 times with PBS-T (PBS with 0.1% Tween 20). Serum samples were diluted 5-fold in PBS-T (1:500 to 1:121,500) and added to wells, followed by incubation for 1 h at 37 °C. Each sample was tested in duplicate. After washing, an HRP-conjugated goat antimouse IgG secondary antibody (Bio-Rad, Hercules, CA, USA) was added to each well and incubated at 37 °C for 1 h. Then, the plates were finally washed and developed with 1-Step TMB Substrate Solution (HEMA, Moscow, Russia) for 15 min. After the reaction with 1 M of H2SO4 was stopped, the resulting absorbance was measured at a wavelength of 450 nm (OD450) using an xMark Microplate Spectrophotometer (Bio-Rad, Hercules, CA, USA). The area under the OD450 curve (AUC) values were calculated as a trapezoidal square for each serum sample and expressed in arbitrary units.
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