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21 protocols using tecnai 10 electron microscope

1

Electron Microscopy Specimen Preparation

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Treated cells were washed and fixed for 30 min in 2.5% glutaraldehyde. The samples were then treated with 1.5% osmium tetroxide, dehydrated with acetone and embedded in Durcupan resin. Thin sections were poststained with lead citrate and examined in the TECNAI 10 electron microscope (Philips, Eindhoven, Netherlands) at 60 kV.
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Retinal Organoid Ultrastructural Analysis

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Retinal organoids (300 days of age) were washed in 1× PBS three times at 10 min intervals and fixed with Karnovsky’s fixative (4% PFA/2% glutaraldehyde in 0.1 M PBS, pH 7.4) overnight at 4°C. For TEM, organoids were washed in 1× PBS and stained in 1% osmium tetroxide (19180, Electron Microscopy Sciences, USA; made in distilled water) for 1 hr at room temperature followed by staining with 2% uranyl acetate (22400, Electron Microscopy Sciences, USA; made in distilled water). After three washes in distilled water, organoids were then dehydrated in a graded series of ice-cold ethanol (50%, 70%, 95%, and 100%) for 20 min each. Organoids were incubated in propylene oxide (00235-1, Polysciences Inc, USA) twice for 5 min, followed by a 5 min incubation in 1:1 mix of propylene oxide: Epon 812 (13940, Electron Microscopy Sciences, USA). Organoids were allowed to infiltrate in Epon 812 overnight at room temperature. Next day, the organoids were embedded in PELCO silicone rubber molds (105, Ted Pella Inc, USA) using Epon 812, and polymerized for 48 hr at 60°C. Ultrathin (70 nm) sections were collected and imaged using a Philips Tecnai 10 electron microscope at the VA Medical Center, San Francisco, USA.
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3

Ultrastructural Analysis of Retinal Organoids

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D180 retinal organoids (hiPSC CRXWT control, CRXT155ins4/+, and CRXK88Q/+) were fixed overnight in 4% PFA (Fisher Acros, 41678-500) + 2.5% glutaraldehyde (Polysciences, 00376) in 0.1 M PO4 buffer solution and rinsed four or five times with 0.1 M PO4 buffer. Fixed organoids were then stained in 1% osmium tetroxide (OsO4; Electron Microscopy Sciences, 19180) in distilled H2O (dH2O) for 1 h at room temperature. Organoids were washed in five changes of cold dH2O, followed by staining in 2% uranyl acetate (Electron Microscopy Sciences, 22400) in dH2O for 1 h at 37°C. After washing in dH2O, the organoids were dehydrated in ethanol (50%, 70%, 95%, 2 × 100%), for 20 min each. The dehydration process was continued with five 20-min incubations in absolute ethanol. The organoids were exposed to propylene oxide (PO; Polysciences Inc., 00235-1) for two 5-min rinses, and then infiltrated with a 1:1 ratio of Epon resin (Epon-812; Electron Microscopy Sciences, 13940) and PO overnight at room temperature. The next day, the mixture was replaced with degassed 100% Epon resin for 1–2 h. The organoids were then embedded in 100% Epon resin in PELCO Silicone Rubber Molds (Ted Pella Inc., PELCO 105) via polymerization for 48 h at 60°C. Sections 70 nm thick were collected on copper mesh grids and imaged using a Philips Tecnai 10 electron microscope.
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TEM Imaging of Cultured Cells and Tumors

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TEM imaging was conducted in cultured cells and tumor samples. Cultured cells were washed twice with PBS and fixed overnight with 2.5% glutaraldehyde in PBS (pH 7.4). Tumors excised from NOD/SCID mice were cut into 1 mm3 pieces and fixed overnight with 2.5% glutaraldehyde solution. The samples were treated with 1.0% osmium tetroxide, dehydrated through a graded ethanol series (50%, 70%, 90%, and 100%), and embedded in Durcupan resin. Ultrathin sections (65 nm) were sliced with an ultramicrotome, poststained with 1% uranyl acetate and 0.1% lead citrate and examined using a TECNAI 10 electron microscope (Philips Electronic Instruments, Holland) at 60 kV.
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5

Transmission Electron Microscopy of Bacteriophages

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Transmission electron microscopy was performed as previously described [28 (link)]. Briefly, filtered supernatants of PA1 cultures induced with mitomycin C (3 μg/ml), either untreated or concentrated by PEG8000 precipitation. Preparations were deposited on carbon-coated copper grids, negatively stained with 2% phosphotungstic acid (pH 4.5), and examined using a TECNAI 10 electron microscope (Philips, The Netherlands).
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6

Electron Microscopy Sample Preparation

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The treated cells were washed and fixed in 2.5% glutaraldehyde (Sigma-Aldrich, G5882) for 30 min. The samples were treated with 1.5% osmium tetroxide, dehydrated with acetone and embedded in Durcupan resin. Thin sections were poststained with lead citrate and examined with a 60 kV TECNAI 10 electron microscope (Philips, Holland).
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Microscopic Evaluation of Transfected Cells

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Phase-contrast images and fluorescent images of the transfected 293 T cells were captured at a magnification of ×200 using an Olympus inverted microscope and a Canon digital camera. Hep-2 cells infected with BYD1 and mock-transfected controls, and 293 T cells transfected with different vectors were fixed with 2% glutaraldehyde–0.5% paraformaldehyde in 0.1 M cacodylate buffer (pH 7.2) for subsequent standard processing, infiltration, embedding, ultrathin section preparation, and staining for high-contrast transmission electron microscopy (TEM). Electron microscopic images were taken with a Philips Tecnai-10 electron microscope.
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8

Ultrastructural Analysis of Tumor Cells

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Tumor tissue was prepared for transmission electron microscopy (TEM) by the standard technical procedures. Tumor ultrastructure was observed by TEM in Imaging Facility of Core Facilities, Zhejiang University School of Medicine, as previously described [15 (link)]. Briefly, tumor sample was fixed in 2.5% glutaraldehyde (4°C, pH 7.4), postfixed in 1% osmium tetroxide, and embedded in an epon–araldite mixture. Ultrathin sections of the tumor tissue were obtained and placed onto mesh copper grids and stained with uranyl acetate and lead citrate. The cell microstructure was observed on a Philips Tecnai 10 electron microscope (Philips, Eindhoven, Netherlands). Cell morphology especially the nuclear and mitochondria were observed.
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9

Ultrastructural Characterization of Cells

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After detachment from culture dishes, cells were centrifuged at 800 rpm for 5 min and then fixed in 2.5% glutaraldehyde at 4°C for 24 h. After washing three times with 6.8% Sabatini's solution (PBS with 6.8% sucrose), the samples were post-fixed in 1% osmium tetroxide for 2 h at 4°C. Then, the specimens were dehydrated in a graded series of ethanol (30, 50, 70, 90 and 100%) and cold acetone (90 and 100%) for 15 min each. Thereafter, the specimens were embedded in propylene oxide, which was polymerized overnight at 80°C. Semi-thin and ultra-thin sections were cut with a Leica Ultracut ultramicrotome and then stained with lead citrate and uranyl citrate for 10 min each. Finally, the samples were examined and photographed using a Philips TECNAI10 electron microscope.
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10

Isolation and Analysis of Cyanobacterial Peptidoglycan

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Peptidoglycan (murein) sacculi were isolated from filaments grown in BG11 medium and analyzed as previously described (Lehner et al., 2013 (link)), with modifications. To get a higher yield of septal peptidoglycan, filaments were treated with a Branson Sonifier 250 (duty cycle: 50%; output control: 3) for 60 s to break up the filaments and to break off the lateral cell wall, which seems to be less stable than the septal peptidoglycan with its thick outer border. The purified sacculi were deposited on formvar/carbon film-coated copper grids (Science Services GmbH München), and stained with 1% (w/v) uranyl acetate. All of the samples were examined with a Philips Tecnai10 electron microscope at 80 kV.
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