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Icap 6000

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Germany

The ICAP 6000 is an inductively coupled plasma (ICP) optical emission spectrometer (OES) designed for elemental analysis. It is capable of detecting and quantifying a wide range of elements in various sample types. The ICAP 6000 utilizes a plasma source to atomize and excite the sample, and an optical system to measure the intensity of the emitted light, which is proportional to the concentration of the elements present.

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84 protocols using icap 6000

1

Microwave-Assisted Extraction and ICP-OES Analysis of Bioaccessible Iron

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Samples were processed using the MARS 6 Microwave digestion system. Samples (0.5 g of starting material or 5 mL of digest) and 5 mL of concentrated nitric acid were added into reaction vessels and placed into the microwave digester. Digestion of the samples was carried out for an hour. The contents were then transferred into Falcon tubes containing 140 μL of 100 ppm yttrium internal standard, and the volume was made to 14 mL with deionised water. Iron in the samples was read using the inductively coupled plasma optical emission spectrometry (ICP-OES) (Thermo ICAP 6000).
Fractionation of the soluble iron into total bioaccessible Fe (TBF) and low-molecular-weight Fe (LWT) in the digested extracts was carried out by centrifugation and ultrafiltration, as described by Powell et al. [18 (link)]. Aqueous suspensions (0.5 mL) were centrifuged (1000 rpm, 5 min), and the supernatant represented the total bioaccessible Fe fraction during in vitro digestion. To separate the low-molecular-weight Fe fraction, a proportion of the supernatant was ultrafiltered through AMICON ULTRA 3 kDa molecular weight cut-off columns (Merck-UFC500396) (1000 rpm, 5 min). Iron concentrations of samples were determined in ICP-OES (Thermo ICAP 6000). The TBF and the LMW were calculated (after subtracting 0.84 ± 0.02 µg/g Fe present in the digestive enzymes) as follows:

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2

Microwave-Assisted Digestion for Bioaccessible Iron

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Samples were processed using the MARS 6 Microwave digestion system. Samples (0.5 g of starting material or 5 ml of digest) and 5 ml of 15.8 M nitric acid were added into reaction vessels and placed into the microwave digester. Digestion of the samples was carried out for an hour. The contents were then transferred into Falcon tubes containing 140 μl of 100 ppm yttrium internal standard, and the volume was made to 14 ml with deionised water. Iron in the samples was read using the inductively coupled plasma optical emission spectrometry -ICP-OES (Thermo ICAP 6000).
Fractionation of the bioaccessible iron into percentages, and low-molecular-weight Fe, in the digested extracts, were carried out by centrifugation (Eppendorf microcentrifuge 5417) and ultrafiltration as described by Powell et al. (2014) . Aqueous suspensions (0.5 ml) were centrifuged (110 g, 5 min), and the supernatant represents the total bioaccessible iron (TBF) released during in vitro digestion. To separate the low-molecular-weight Fe fraction (LMW), a fraction of the supernatant was ultrafiltered through AMICON ULTRA 3 kDa molecular weight cut-off columns (Merck-UFC500396) (110 g rpm, 5 min). Iron concentrations of samples were determined in ICP-OES (Thermo ICAP 6000). The TBF and the LMW were calculated as follows:
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3

Wheat Grain Flour Elemental Analysis

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Fifty mg of dried and milled wheat grain flour was taken to be digested by (2 mL) nitric acid (HNO3 69%, Bernd Kraft GmbH, Germany). The digestion process was completed using a high-performance microwave reactor (UltraClave IV, MLS, Leutkirch im Allgäu, Baden-Württemberg, Germany). All digested samples were filled up to 15 mL final volume with de-ionized distilled (Milli-Q) water (Milli-Q® Reference System, Merck, Germany). Element standards were prepared from Bernd Kraft multi-element standard solution (Germany). Fe as an external standard and Yttrium (Y) (ICP Standard Certipur® Merck, Germany) were used as internal standards for matrix correction. Fe concentrations were measured by Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES, iCAP 6000, Thermo Fisher Scientific, Dreieich, Germany) combined with a CETAC ASXPRESS™ PLUS rapid sample introduction system and a CETAC autosampler (CETAC Technologies, Omaha, NE, USA).
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4

Ion Release Kinetics of Synthetic MBGNs

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Zn, Mn, Si, and Ca-ion release from synthesized MBGNs was determined by dispersing the MBGNs in SBF (75 mg/50 mL) for 21 days. The samples were placed in a shaking incubator at 37 °C to measure the release of ions under dynamic conditions using inductively coupled plasma-optical emission spectrometry (ICP-OES) (Thermo Scientific iCAP 6000). The aliquots were taken out at days 1, 3, 7, 14, and 21, and re-filled with fresh SBF.
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5

Brachiopod Shell Magnesium Analysis

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The magnesium content of the studied brachiopod shells was analysed using a Thermo Scientific iCap 6000 dual view ICP-OES (Inductively Coupled Plasma - Optical Emission Spectrometry) at the Goethe University, Frankfurt, Germany. For the analyses, we took 120–150 μg of carbonate powder from the homogenised batches that were also used for the isotope measurements and dissolved them in 0.500 cm3 2% HNO3. An aliquot of 0.300 cm3 of the sample solution was diluted with 1.500 cm3 yttrium water (until 1.000 mg/dm3) prior to measurement to correct for matrix biases during analyses. The Mg/Ca measurements were drift-corrected and standardized to an internal consistency standard (ECRM 752–1) measured alongside with the samples. The external reproducibility (2σ S.E.) for this standard was ±0.1 mmol/mol Mg/Ca. Finally, the MgCO3 concentration values (mol%) were adjusted to a 100% carbonate basis and were normalised to a combined Ca and Mg value of 395,000 ppm20 (link).
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6

Measuring Plant Nutrient Dynamics

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Five representative J. acutiflorus specimens were harvested for initial measurements of plant dry weight and C/N ratios. At the final time point (Tf, 90 days), all plants were harvested to measure dry weight and C/N ratios of roots, shoots, and rhizomes. Pore water was extracted using 0.15-µm porous soil moisture samplers (SMS rhizons, Rhizosphere Research Products, Wageningen, The Netherlands) and measured over the course of the experiment to determine inorganic nutrients as well as metals using an AutoAnalyzer (AutoAnalyzer 3; Bran+Luebbe, Germany) and ICP-OES (iCAP6000; Thermo Scientific, Waltham, MA). To reduce the impact of soil heterogeneity, samples were extracted in duplicate and mean values were calculated.
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7

Detailed Aquatic Geochemical Analysis

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DOC concentrations
were measured on a Shimadzu (TOC-VCPH and TNM-1) analyzer, using high-temperature
catalytic oxidation, against a calibration series and a deep sea reference
standard provided by D. Hansell (University of Miami, Miami, FL).
The samples were measured via a low-volume hand-injection method.36 (link) Concentrations of nutrients [sum of nitrate
and nitrite (NOx), ammonium, and phosphate]
and Fe2+ from ferrozine treatments of the porewater samples
were measured by UV/vis microplate spectroscopy (Multiscan Spectrum,
Thermo Scientific) at the ICBM Microbiogeochemistry Laboratory at
the University of Oldenburg (Oldenburg, Germany). Nutrients were measured
with a method modified from refs (37 (link)) and (38 ), and Fe2+ was measured according to ref (35 (link)). Total Fe and Mn were
measured by inductively coupled plasma optical emission spectrometry
(ICP-OES) (iCAP 6000, Thermo Scientific) coupled with an argon humidifier
(T 2100 BR); resultant data were analyzed with iTEVA software. Calibration
was performed with NIST traceable standard solutions and verified
using SLEW-3 as reference material.34 (link)
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8

Synthesis of Silver Hollandite

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The synthesis of silver hollandite, AgyMn8O16·nH2O, was performed using an ambient pressure reflux reaction approach as previously described16 17 (link). Samples were heat treated at 300°C under air prior to microscopic analysis. X-ray powder diffraction patterns were collected on a Rigaku SmartLab and indexed to Ag1.8Mn8O16 (JCPDS no. 87-087)38 . Crystallite sizes were determined by applying the Scherrer equation to the (211) peak after LaB6 correction. Inductively coupled plasma-optical emission spectroscopy (Inductively coupled plasma-optical emission spectroscopy ) was employed on a ThermoScientific iCap 6,000. Thermogravimetric analysis (TGA) was collected on a TA Instruments SDT Q600, where water content was estimated based on weight loss to 360 °C (refs 7 , 15 ). On the basis of results of X-ray powder diffraction, ICP-OES and TGA, the composition was assigned as Ag1.63Mn8O15.7·0.84H2O. In addition, a series of chemically lithiated materials were prepared using LiBH4 as a lithiating reagent and studied as reference samples for ex situ TEM.
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9

Quantifying Intracellular Ion Concentrations

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Intracellular and extracellular Na+, K+, Mg2+, and Ca2+ concentrations of wtNHE1 and NHE1-mutant cells were determined using inductively coupled plasma optical emission spectroscopy (ICP-OES, iCAP 6000, Thermo Scientific, Canada). Cells were seeded in a 12-well plate, grown to confluence, and either stimulated (0.2% serum) or unstimulated (10% serum) overnight. Cells were thoroughly washed in sodium- and potassium-free buffer and then lysed with 0.5 mL of 0.1% Triton X-100 and 0.2% nitric acid overnight at 4°C with agitation, prior to sonication for 1 min as previously described [57 (link)]. Samples and buffer blanks were then diluted 100 times in ultrapure deionized water and filtered to remove any particulate matter. For the ICP-OES analysis, the digestion method used was EPA 3051, with nitric acid at a ratio of 5 mL HNO3 to 20 mL ultrapure deionized water, using the Xpress Mars Microwave Digestion System (CEM Corp., US).
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10

Determination of Iron Content and Isotopes in Plant Material

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Prior to Fe content analysis, the plant material (0.5 g DW) was calcined in a muffle furnace for 12 h at 550 °C. Subsequently, Fe was extracted with 2% nitric acid (Hiperpur Panreac, Fe < 1 ppb) in an ultrasonic bath (Fungilab S.A., Sant Feliu de Llobregat, Barcelona, Spain) for 30 min at 40 °C and diluted to 50 mL final volume. This extraction was divided into two subsamples to determine total Fe and 57Fe concentrations.
Total Fe concentration was measured with the AAS analyzer (iCAP 6000, Thermo Scientific). The abundance in 57Fe of each sample was determined using a multiple-collector inductively coupled to an isotope-ratio mass spectrometer (MC-ICP MS, Thermo Finnigan Neptune) [57 (link)].
All analyses were carried out with ultrapure water (Ultra Pure Water Systems Milli Q Plus). All determinations were performed in duplicate and a standard was run to ensure accuracy after each set of 10 samples.
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