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63 protocols using pparα

1

Quantitative Analysis of iNOS, DNMT1, and PPARα Expression in Ethanol-Induced Liver Damage

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Liver tissues from heterozygous mice were fixed in neutral-buffered formalin, embedded in paraffin, cut into 4 μm thick sections, and stained with antibodies to inducible nitric oxide synthase (iNOS), DNMT1 and PPARα, each at 1/100 titer (Epitomics, Burlington, CA), followed by Donkey fluorescein isothiocyanate (FITC) labeled antibody 1/100 titer (Jackson ImmunoReaserch Labs Inc., Westgrove, PA). The expression of each of these genes had been identified by qPCR analysis as significantly altered in samples from ethanol fed mice and normalized in samples from betaine supplemented mice. Cellular fluorescence intensity was quantified in each slide in blinded fashion using a fluorescein isothiocyanate filter, Nikon morphometric software, and a Nikon 400 fluorescent microscope 40x objective with the same sensitivity setting throughout (Bardag-Gorce et al., 2008 (link)).
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2

Western Blotting Analysis of Liver

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The method of western blotting analysis of liver used was like that used in a previous study [22 (link)]. This method used antibodies including sterol regulatory-element binding proteins (SREBP)-1c (Biosynthesis Biotechnology Co., Ltd., Beijing, China), fatty acid synthase (FAS) (Epitomics, Inc. USA), peroxisome proliferator-activated receptor alpha (PPARα) (Epitomics, Inc. USA), hormone-sensitive lipase (HSL) (Santa Cruz, Inc. USA) glyceraldehyde 3-phosphate dehydrogenase (Proteintech, Inc. USA), and horseradish peroxidase-conjugated secondary antibodies (Proteintech, Inc. USA).
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3

Western Blot Analysis of PPAR Isoforms

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APs were lysed and total cellular protein was isolated using M-PER reagent (Thermo Scientific Inc.). Equal amounts (15μg) of protein from each sample was loaded on 4–15% SDS-polyacrylamide gel (Bio-Rad Inc., CA), separated and transferred onto a PVDF membrane (Bio-Rad Inc., CA). Expressions were detected by incubating the PVDF membrane with specific antibodies to PPAR-α (1:1000), PPAR-δ (1:1000), Tim 4(1:500) (abcam Inc., MA) and PPAR-γ (1:1000) (Cell signaling technologies Inc.). Signals were visualized by chemiluminescent detection.
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4

Investigating Anti-inflammatory Mechanisms

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As-IV (purity: 98%) was provided by Jingzhu Biotechnology Co., Ltd. (Nanjing, China). LPS, BAY, adenosine triphosphate (ATP) and adenosine monophosphate (AMP) standards were provided by Sigma-Aldrich (St. Louis, MO, USA). ELISA kits for determination of free fatty acid (FFA), tumor necrosis factor alpha (TNF-α), interleukin-1β (IL-1β) and interleukin-6 (IL-6) levels were provided by R&D Systems (Minneapolis, MN, USA). TLR4, NF-κB, p65, PPARα, ATP5D and GAPDH antibodies were purchased from Abcam (Cambridge, MA, USA). All other reagents are analytically pure reagents.
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5

Western Blot Analysis of Adipogenic and Myogenic Markers

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Tissue samples were lysed in lysis buffer (iNtRON Biotechnology, Seoul, Korea), and lysate protein concentrations were determined using a protein assay kit (Bio-Rad, Hercules, CA, USA). Equal amounts of protein were separated by SDS-PAGE gel electrophoresis and transferred to membranes. Membranes were blocked with 5 % skimmed milk and incubated with the indicated primary antibodies overnight at 4 °C. After washing, membranes were incubated with horseradish peroxidase-conjugated secondary antibodies. Antibodies against C/EBPα, PPARγ, FABP4, p-PKA (Ser 114), PGC1α, MyoD, myogenin, and MEF-2 were purchased from Santa Cruz Biotechnology (Dallas, TX, USA); antibodies against ATGL, p-HSL (Ser 563), and p-AMPK (Thr172) were purchased from Cell Signaling Technology (Danvers, MA, USA); antibodies against MGL, PPARα, PRDM16, UCP1, NRF1, TFAM, UCP3, Atrogin-1, MuRF1, and MYH7 were purchased from Abcam (Cambridge, UK); and an antibody against β-actin was purchased from ABM (Richmond, BC, Canada).
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6

Antioxidant Enzymatic Assay in Lens

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At the end of experiments, the lenses (n = 3 per group) were washed with PBS and lysed in RIPA buffer containing protease inhibitors (Aidlab Biotechnologies, Beijing, China) for 30 min on ice. The lens lysates were centrifuged at 12,000×g for 20 min at 4 °C, and the proteins were quantified using the BCA kit. Protein samples (80 μg) were separated by 10% sodium dodecylsulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Millipore, Billerica MA, USA). The membranes were blocked with 5% fat-free dry milk for 2 h and then incubated with a rabbit polyclonal antibody against SOD (1:300, R&D Systems, Minneapolis, MN, USA), CAT (1:300, Abcam, Cambridge, MA, USA), peroxisome proliferator-activated receptor alpha (PPARα) (1:500, Abcam, Cambridge, MA, USA), or GAPDH (1:1000, R&D Systems MN, USA) at 4 °C overnight. Then, the membranes were incubated with horseradish peroxidase-conjugated anti-rabbit IgG (1:1000, Cell Signaling Technology Inc., USA) for 2 h. Finally, the protein bands were developed using enhanced chemiluminescence reagents (Millipore). Images were obtained using a Kodak Image Station 4000R (Eastman Kodak Co., Rochester, NY, USA) and analyzed using Kodak Image Software. The optical densities of specific immunopositive bands were normalized to the GAPDH band in the same sample.
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7

Analyzing Cardiac Apoptosis and Mitochondrial Biogenesis

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Apoptosis was assessed in myocardial sections stained with double fluorescent terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) and connexin-43 staining (Abcam, Cambridge, Massachusetts, USA; catalog#ab79010), as well as single fluorescent caspase-3 (1 : 200; Santa Cruz Biotechnology, Inc., Dallas, Texas, USA) staining. Mitochondrial biogenesis was evaluated by expression of peroxisome proliferator-activated receptor gamma coactivator (PGC)-1α (1 : 1000; Abcam), guanine adenine-binding protein (GABP, 1 : 1000; Abcam), and peroxisome proliferator-activated receptor (PPAR)-α (1 : 1000; Abcam), as described [6 (link)].
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8

Liver and Adipose Tissue Protein Analysis

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After four weeks of feeding, six groups of mice (NCD, HFD, Fenofibrate, ON50, ON100, and ON200) were sacrificed to collect liver and adipose tissues. Murine liver and fat tissues were homogenized in 1 mL of RIPA buffer (10 mM Tris pH 7.8, 1 mM EDTA, 150 mM NaCl, phosphatase inhibitor, and protease inhibitor) using a homogenizer. Tissue lysate was collected and protein analysis was performed using Protein Assay Kit (Bio-Rad, Hercules, CA, USA). Total protein (40 µg) was then subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and PVDF membrane transfer (Millipore, Bedford, MA, USA). Rabbit primary antibodies against carnitine palmitoyltransferase (CPT1α), UCP1α, adipocyte protein 2 (AP2), PPARγ, CCAAT/enhancer-binding protein α (c/EBPα) (Cell Signaling Technology, MA, USA), PPARα, peroxisomal acyl-coenzyme oxidase 1 (ACOX1), and SPHK2 (Abcam, Cambridge, MA, USA) were then used respectively to detect target proteins on PVDF membrane. These samples were normalized to mouse primary antibody against β-actin (Millipore, Cambridge, MA, USA). After incubation with secondary horseradish peroxidase (HRP) conjugated goat anti-rabbit IgG antibody (Millipore, Bilerica, MA, USA), blots were developed with enhanced chemiluminescent substrate (Millipore, Bilerica, MA, USA). Bands were detected using a Chemiluminescence imaging equipment (Viber Lourmat, France).
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9

Western Blot Analysis of Cardiac Proteins

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Total protein was extracted from the rat heart tissues using M-PER mammalian Protein Extraction Reagent (Thermo Scientifics, USA). Protein lysates were boiled for 10 minutes and loaded onto a 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) gel. Proteins were transferred to polyvinylidene fluoride (PVDF) membranes and blocked with 5% non-fat milk. Membranes were then incubated overnight at 4 °C with primary antibodies against PPARα (Abcam, UK), FoxO1 (Abcam, UK), phosphorylated FoxO1 (Cst, USA), Akt (Cst, USA), Gck (Abcam, UK), Glut1 (Abcam, UK), Bcl-2 (Abcam, UK), or Bax (Proteintech, China). After washing with Tris buffered saline Tween (TBST), membranes were incubated with secondary antibodies (1:10,000, Proteintech, China) for 1 hour at room temperature (RT), washed again with TBST, and visualized with enhanced chemiluminescence reagents. Chemiluminescence images were obtained by using the ChemiDoc Imaging Systems (Bio-rad) and Image J software was used to quantify protein expression.
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10

Effect of Melanogenesis Modulators on Skin Pigmentation

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Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), penicillin and streptomycin were purchased from Gibco BRL (Carlsbad, CA, USA). OEA, kojic acid, MK886, L-DOPA, dimethyl sulfoxide (DMSO), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), α-melanocyte-stimulating hormone (α-MSH), PD98059 and PTU were purchased from Sigma-Aldrich Co. (St Louis, MO, USA). Antibodies against MC1R (1:1000, Cell Signaling Technology, Boston, USA), MITF (1:1000, Cell Signaling Technology), TRP-1 (1:1000, Cell Signaling Technology), Tyrosinase (1:1000, Cell Signaling Technology), PPARα (1:1000, Abcam, Cambridge, UK), total-ERK (1:1000, Cell Signaling Technology), phospho-ERK (Thr202/Thr204) (1:1000, Cell Signaling Technology), total-Akt (1:1000, Cell Signaling Technology), phospho-Akt (Ser473) (1:1000, Cell Signaling Technology), total-CREB (1:1000, Cell Signaling Technology), phospho-CREB (Ser133) (1:1000, Cell Signaling Technology), total-p38 (1:1000, Cell Signaling Technology), phospho-p38 (1:1000, Cell Signaling Technology) and mouse monoclonal anti-β-actin (1:10000, Sigma) were obtained from the indicated manufacturers. OEA, kojic acid, MK886, PD98059 and PTU were dissolved in dimethyl sulfoxide (DMSO), and the final DMSO concentration was less than 0.05%. L-DOPA was dissolved in phosphate buffered saline (PBS).
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