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11 protocols using recombinant human stem cell factor

1

Mast Cell Degranulation Assay

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LAD-2 cells (National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA) were maintained in StemPro-34 medium (Life Technologies, Grand Island, NY, USA) supplemented with 2 mM l-glutamine, 100 U/mL penicillin, 50 μg/mL streptomycin, and 100 ng/mL recombinant human stem cell factor (R&D Systems). LAD-2 cells were sensitized using 100 ng/mL biotinylated-IgE (BioPorto Diagnostics, Hellerup, Denmark) with or without 5 µg/mL EETs. Cells were stimulated with 100 ng/mL streptavidin peroxidase (Sigma-Aldrich) in Tyrode’s buffer containing 0.1% BSA. Total β-hexosaminidase was obtained via lysing of LAD-2 cells in 0.1% Triton X-100 in PBS. The supernatants were collected and incubated with an equal volume of 4 mM p-nitrophenyl N-acetyl-β-d-glucosamide (Sigma-Aldrich) in citrate buffer for 1 h. The reactions were stopped via the addition of 0.4 M glycine buffer, and signals were read at a wavelength of 405 nm. Levels of TNF-α and MCP-1 (R&D Systems) were measured using ELISA kits according to the manufacturer’s protocol.
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2

Derivation of Human Mast Cells

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To assess drug effects upon human mast cell (hMC) degranulation, primary human mast cells were derived from human umbilical cord blood positive for CD34+ and CD45+ antigens (Astarte Biologics) (Kirshenbaum and Metcalfe, 2006 (link)). Briefly, CD34+ CD45+ cells were cultured in serum-free culture media (Stemline II, Sigma) containing recombinant human stem cell factor (100 ng/mL, R&D Systems), recombinant human IL-6 (100 ng/mL, R&D Systems), and recombinant human IL-3 (20 ng/mL, R&D Systems, first week only). After 10 weeks, hMCs were consistently generated as confirmed by the expression of CD117 and FcεRI. Cell maturation was confirmed by metachromatic staining with toluidine blue. The purity of hMCs was > 98%.
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3

Generation of Primary Murine and Human Mast Cells

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Primary murine MCs were generated following our previously published protocol 24 (link). Briefly, bone marrow cells were cultured in RPMI 1640 medium (Invitrogen) supplemented with recombinant murine IL-3 (1 ng/ml, R&D Systems) and recombinant murine stem cell factor (20 ng/ml, R&D Systems). After 4 weeks, MCs were consistently generated as confirmed by the expression of CD117 (c-Kit) and FcεRI and cell maturation was confirmed by metachromatic staining with toluidine blue. The purity of MCs was greater than 98%.
Primary human mast cells were derived from human cord blood CD34+CD45+ cells (Astarte Biologics) according to Kirshenbaum and Metcalfe 36 (link). Briefly, CD34+CD45+ cells were cultured in serum-free medium (Stemline II, Sigma) containing recombinant human stem cell factor (100 ng/ml, R&D Systems), recombinant human IL-6 (100 ng/ml, R&D Systems), and recombinant human IL-3 (20 ng/ml, R&D Systems, first week only). After 10 weeks, hMCs were consistently generated as confirmed by the expression of CD117 and FcεRI. Cell maturation was confirmed by metachromatic staining with toluidine blue. The purity of hMCs was greater than 98%.
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4

Enrichment and Culture of Erythroblasts

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LCLs were cultured in upright non-adherent T25 tissue culture flasks (Nunc) at 37 °C and 5% CO2. LCL media consisted of RPMI 1640 (Thermo Fisher, Waltham, MA, USA), supplemented with 1× GlutaMAX™ (Thermo Fisher), and 20% fetal bovine serum (Thermo Fisher). Erythroblasts were enriched in mixed PBL cultures following a previously published protocol [33 (link)]. Briefly, PBLs were cultured in erythroblast media containing StemSpan™ SFEM (Stem Cell Technologies, Vancouver, BC, Canada), 50 ng/mL recombinant human stem cell factor (R&D Systems, Minneapolis, MN, USA), 1 μM Dexamethasone (Sigma-Aldrich, St. Louis, MO, USA), 40 ng/mL IGF1 (Miltenyi Biotec, Bergisch Gladbach, Germany), 10 ng/mL Interleukin 3 (Miltenyi Biotech), 2 U/mL human erythropoietin (R&D Systems), and 10 μg/mL Gentamicin (Thermo Fisher). Magnetic beads labelled with a CD71 antibody were then used to enrich for erythroblasts, following the manufacturer’s instructions (Miltenyi Biotec).
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5

Cell Line Validation and Mycoplasma Screening

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293T cells, T-ALL cell lines, AML cell lines and B-ALL cell lines were obtained from ATCC (Manassas, VA, USA), DSMZ (Braunschweig, Germany), the A. Thomas Look laboratory (Boston, MA, USA) or Alex Kentsis laboratory (New York, NY, USA) and cultured in DMEM, RPMI-1640 or MEM alpha (Thermo Fisher Scientific) with 10% or 20% fetal bovine serum (FBS, Sigma-Aldrich, Saint Louis, MO) or TET system approved FBS (Clontech, Mountain View, CA) and 1% penicillin/streptomycin (Thermo Fisher Scientific) at 37°C, 5% CO2. Human CD34 + progenitor cells from mobilized peripheral blood of healthy donors were obtained from Fred Hutchinson Cancer Research Center (Seattle, WA, USA). CD34+ progenitors were cultured in IMDM (Thermo Fisher Scientific) supplemented with 20% FBS and recombinant human interleukin-3 (R&D systems, Minneapolis, MN), recombinant human interleukin-6 (R&D systems, Minneapolis, MN) and recombinant human stem cell factor (R&D systems, Minneapolis, MN) to a final concentration of 50 ng/ml each.
Cell line identities were validated using STR profiling at the Dana-Farber Cancer Institute Molecular Diagnostics Laboratory (most recently in June 2018), and mycoplasma contamination was excluded using the MycoAlert Mycoplasma Detection Kit according to the manufacturer’s instructions (Lonza, Portsmouth, NH; most recently in March 2018).
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6

Expansion of Human Hematopoietic Stem Cells

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We purchased MBD2a, b, and Flag antibodies from Sigma-Aldrich (Catalog numbers M7318 and F1804), StemSpan and SFEM II media from StemCell Technologies, and recombinant human stem cell factor (SCF) and recombinant human Thrombopoietin (TPO) from R&D systems. In addition, we obtained doxycycline (DOX), dexamethasone (DEX), recombinant human insulin, heparin, and human AB serum from Sigma Aldrich and human AB plasma from Seracare. We purchased recombinant Erythropoietin (EPO) from Virginia Commonwealth University (VCU) hospital pharmacy, holo-human transferrin (HTF) from Prospec, and human Flt3-ligand from PeproTECH.
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7

IgE-Mediated Degranulation Assay in LAD2 Cells

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LAD2β-hexosaminidase assays were performed as described previously.20 (link) Briefly, LAD2 cells were maintained in serum-free medium (StemPro-34; Life Technologies) supplemented with StemPro-34 nutrient supplement, 2 mM L-glutamine and 100 ng/ml recombinant human stem cell factor (R&D Systems, Minneapolis, MN, USA). Cells were seeded at a density of 2.5×104cells/well and incubated in a 96-well polypropylene plate with test antibodies for 30 min at 37 °C before addition of IgE to a final concentration of 0.15 nM. Following a 4-h incubation at 37 °C, cells were washed with buffer to remove excess IgE, and IgE bound to FcεRI on the LAD2 cells was crosslinked with anti-IgE (600 µg/ml goat-261 anti-human IgE; Sigma-Aldrich, St. Louis, MO, USA) for 30 min at 37 °C. The incubation was stopped by centrifugation at 4 °C, and the cell supernatants analyzed for β-hexosaminidase content.
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8

Mast Cell Degranulation Assay with UCA

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Laboratory of Allergic Disease 2 (LAD-2) mast cells were kindly provided by Dr. Arnold Kirshenbaum (National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA). Cells were maintained in StemPro-34 medium (Life Technologies, Grand Island, NY, USA) supplemented with 2 mM L-glutamine, 100 U/mL penicillin, 50 μg/mL streptomycin, and 100 ng/mL recombinant human stem cell factor (R&D Systems, Minneapolis, MN, USA) as described previously43 (link).
LAD-2 cell degranulation was evaluated by the β-hexosaminidase release test44 . Cells were treated for 16 h with cis- or trans-UCA with or without simultaneous sensitisation with biotinylated-IgE (100 ng/mL, BioPorto Diagnostics, Hellerup, Denmark) (IgE-mediated and non-IgE mediated degranulation), followed by 30 min of stimulation with streptavidin peroxidase (100 ng/mL) or calcium ionophore A23187 (1 µM, Sigma) in Tyrode’s buffer containing 0.1% BSA. Total β-hexosaminidase was obtained by lysing LAD-2 cells in 0.1% Triton X-100 in PBS. The supernatants were collected and incubated with an equal volume of p-nitrophenyl N-acetyl-β-D-glucosamide (Sigma, 4 mM in citrate buffer) for 1 h. The reactions were stopped by adding 0.4 M glycine buffer, and the signals were read at 405 nM. The percentage of degranulation was calculated as 100 × (OD stimulated − OD unstimulated)/(OD total lysate − OD unstimulated).
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9

Mast Cell Activation by IgE and TIMP-1

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LAD-2 cells were provided by the National Institute of Allergy and Infectious Diseases (Bethesda, MD, USA) and cultured in StemPro-34 medium (Life Technologies) supplemented with 2 mM L-glutamine (Gibco), 1% penicillin-streptomycin, and 100 ng/mL recombinant human stem cell factor (R&D Systems). LAD-2 cells (5 × 104 cells) were stimulated with 10 ng/mL human simultaneous biotinylated-IgE (BioPorto Diagnostics, Hellerup, Denmark) with or without 100 ng/mL TIMP-1 in serum-free StemPro-34 medium plus 1% penicillin-streptomycin for 24 hours. To create cross-linking of 2 IgE molecules on LAD-2 cells, 100 ng/mL streptavidin-horseradish peroxidase conjugate having the ability to bind to biotinylated proteins was added to supernatants for 6 hours before harvesting. In some conditions, cells were pretreated with 1 µg/mL Dex for 30 minutes. Supernatants were collected for ELISA.
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10

Erythroid Differentiation of CECs

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CECs were differentiated from human PBMCs according to the protocol by Heshusius et al.71 (link) with modifications. Human PBMC were purified from buffy coats from healthy donors by density separation using Lymphoprep (STEMCELL Technologies). PBMC were seeded at 1 × 106 cells/ml in erythroid differentiation-promoting medium based on StemSpan™ Serum-Free Expansion Medium (SFEM) supplemented with human recombinant EPO (2 U/ml, Roche), human recombinant stem cell factor (25 ng/ml, R&D Systems), dexamethasone (1 µM, Sigma-Aldrich), human recombinant insulin (10 ng/ml, Sigma-Aldrich), l-glutamine (2 mM, Sigma-Aldrich), iron-saturated holo-transferrin (20 μg/ml, Sigma-Aldrich), sodium pyruvate (1 mM, Gibco), MEM non-essential amino acids (1% v/v, Gibco), bovine serum albumin (0.1% m/v, Sigma-Aldrich), EmbryoMax Nucleosides (1% v/v, Merck), and 100 U/ml penicillin and 100 μg/ml streptomycin (Sigma-Aldrich). The expansion and differentiation of CECs were assessed by flow cytometry.
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