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18 protocols using erlotinib

1

Inhibitor Formulation and Preparation

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The JAK1/2 inhibitor AZD1480 was provided by AstraZeneca. The type II JAK2 inhibitor BBT594 was provided by Novartis. INCB18424 and EGFR TKI erlotinib were purchased from Chemietek. Pan-JAKi P6 was purchased from Calbiochem. The EGFR T790M–specific inhibitor WZ4002 was purchased from Selleck Chemicals. For in vitro experiments, the inhibitors were dissolved in 100% dimethyl sulfoxide (DMSO) to prepare a 10 mM stock and stored at −20°C. For in vivo experiments, the indicated inhibitors were formulated daily in purified, sterile water supplemented with 0.5% methyl cellulose and 0.1% Tween 80.
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2

TGF-beta Signaling Pathway Inhibitors Protocol

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Polyclonal anti-Shc1 antibody was obtained from Thermo Scientific Pierce (Rockford, IL), and polyclonal anti-MADH7 (Smad7) antibody was purchased from Abcam Inc. (Cambridge, MA). Anti-HDAC2 was purchased from Millipore (Billerica, MA). The following antibodies were purchased from Cell Signaling Technology (Danvers, MA): anti-pSma2 (linker and COOH specific phosphorylation), anti-Smad2, anti-pSmad3, anti-Smad3, anti-pAKT, anti-pERK, anti-BIM, anti-PARP, and anti-GAPDH. Recombinant human TGFβ-1 protein was purchased from R&D Systems (Minneapolis, MN) and reconstituted in 4 mM HCL and 1 mg/mL bovine serum albumin solution. Dasatinib and erlotinib were obtained from ChemieTek (Indianapolis, IN) and diluted in DMSO. LY-364947 was purchase from Sigma-Aldrich (St. Louis, MO). AZD0530 was obtained from AstraZeneca (London, UK).
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3

Targeted Drug Screening Protocol

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Bosutinib, masitinib and midostaurin (PKC412) were purchased from LC Laboratories (Woburn, MA, USA), ponatinib from Selleck Chemicals (Houston, TX, USA), piceatannol and pimozide from Sigma Aldrich (San Louis, MO, USA), and dasatinib, sorafenib, sunitinib, tozasertib, vorinostat, everolimus (RAD001), erlotinib, gefitinib, and lapatinib from ChemieTek (Indianapolis, IN, USA). Imatinib, nilotinib, and BEZ235 were kindly provided by Dr.E.Buchdunger and Dr.P.W.Manley (Novartis, Basel, Switzerland). Stock solutions of drugs were prepared by dissolving in DMSO (Merck, Darmstadt, Germany). A specification of targeted drugs is shown in Supplementary Table S1. RPMI 1640 medium and fetal calf serum (FCS) were from PAA Laboratories (Pasching, Austria), 3H-thymidine from Amersham (Buckinghamshire, United Kingdom), and the Annexin V-FITC Kit from eBiosciences (San Diego, CA, USA). Recombinant human (rh) stroma cell-derived factor-1 alpha (SDF-1α) and rh eotaxin were purchased from R&D Systems (Minneapolis, MN, USA), and rh interleukin-5 (IL-5) from BD Bioscience (San José, CA, USA). A specification of monoclonal antibodies (mAb) used in this study is shown in Supplementary Table S2.
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4

Compound Sources for CIVO and Systemic Studies

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Compounds used in the CIVO and systemic studies were purchased from Selleck Chemicals (Everolimus, Sunitinib, 5-Fluorouracil, Rapamycin, Gemcitabine, ABT-199, ABT-263, Erlotinib), Chemietek (ABT-263, ABT-199) and Medkoo Biosciences (Mitomycin C). Abraxane® was manufactured by Celgene Corporation (San Diego, CA).
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5

Identifying Anti-Neoplastic Drug Candidates

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A number of anti-neoplastic drugs were tested for their ability to inhibit growth of MM cells: the tyrosine kinase inhibitors (TKI) bosutinib, dasatinib, imatinib, sorafenib, sunitinib, and nilotinib, the ErbB-receptor inhibitors lapatinib, erlotinib, and gefitinib, the Aurora-kinase inhibitor VX-680, the HSP90 inhibitor 17AAG, the PLK-1 inhibitor BI2536, the pan-BCL-2 antagonist obatoclax, and the HDAC-inhibitor vorinostat were purchased from Chemietek (Indianapolis, IN, USA). The PI3 kinase/mTOR inhibitor BEZ235 was obtained from Selleck Chemicals (Houston, TX, USA). Stock solutions of drugs were prepared by dissolving in dimethylsulfoxide, DMSO (Merck, Darmstadt, Germany). RPMI 1640 medium and fetal calf serum (FCS) were purchased from PAA Laboratories (Pasching, Austria), and 3H-thymidine from PerkinElmer (Waltham, MA, USA). FITC-labeled CD34 monoclonal antibody (mAb) 581, PE-labeled CD34 mAb 581, FITC-labeled CD138 mAb MI15, PE-labeled CD138 mAb DL-101, PerCP-labeled CD45 mAb 2D1, APC-labeled CD38 mAb HIT2, PE-labeled and Alexa Fluor® 647-labeled active caspase-3 mAb C92-605 were purchased from BD Biosciences (San Jose, CA, USA). The PerCP-labeled CD20 mAb 2H7 and the APC-labeled CD27 mAb O323 were obtained from Biolegend (San Diego, CA, USA), and an Annexin V/FITC kit from eBioscience (San Diego, CA, USA).
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6

Preparation of Combination Chemotherapies

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We purchased the drugs from the commercial sources: paclitaxel, doxorubicin/adriamycin, 5-fluorouracil, epirubicin, cyclophosphamide, crizotinib, salinomycin, thioridazine, phenethyl isothiocyanate (PEITC), sodium valproate, sodium butyrate, 5-azacytidine, and 6-mercaptopurine (Sigma-Aldrich, St. Louis, MO), NVP-BEZ235 (Cayman Chemical, Ann Arbor, MI), and itraconazole (Selleckchem, Houston, TX). Naoto Ueno kindly provided AZD6244 (AstraZeneca, Wilmington, DE) and erlotinib (ChemieTek, Indianapolis, IN). We dissolved BEZ235, PEITC, itraconazole, crizotinib, salinomycin, doxorubicin, paclitaxel, AZD6244, and erlotinib in dimethyl sulfoxide (DMSO), thioridazine, sodium valproate, and sodium butyrate in water, 6-mercaptopurine in 0.1 M NaOH, and 5-azacytidine in dulbecco’s phosphate buffered saline. To prepare FAC (5-fluorouracil, adriamycin, cyclophosphamide) and FEC (5-fluorouracil, epirubicin, cyclophosphamide) chemotherapy combinations, drugs were measured individually and dissolved into DMSO and combined. Final concentrations of drugs were 250 nM 5-fluorouracil, 25 nM adriamycin, and 250 nM cyclophosphamide for FAC and 250 nM 5-fluorouracil, 50 nM epirubicin, and 250 nM cyclophosphamide for FEC. We added equal volume of the solvent in all dishes including the control dishes without drugs. DMSO volume was ≤0.04% of the volume of the culture medium.
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7

Tyrosine Kinase Inhibitor Evaluation

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Gefitinib, erlotinib, afatinib, and WZ4002 were purchased from Chemie Tek (Indianapolis, IN). CL-387,785 was purchased from AXXORA (San Diego, CA).
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8

Small Molecule Inhibitor Screening Protocol

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Crizotinib, ceritinib, brigatinib, cabozantinib and afatinib were purchased from Selleck Chemicals (Houston, TX, USA); gefitinib and cetuximab were purchased from Eveleth (Eveleth, MN, USA); erlotinib was purchased from Chemie Tek (Indianapolis, IN, USA); lorlatinib was purchased from Toronto Research Chemicals (Toronto, ON, Canada; and gilteritinib was purchased from Cayman Chemical (Ann Arbor, MI, USA). Recombinant HB‐EGF, EGF, FGF and IGF were purchased from R&D Systems (Minneapolis, MN, USA).
Antibodies against ROS1, phospho‐specific (p) ROS1 (Tyr2274), EGFR, pEGFR (Tyr1068), mitogen‐activated protein kinase (MAPK), pMAPK (Thr202/Tyr204), AKT, pAKT (Ser473), AXL and glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH), and HRP‐conjugated antirabbit antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA).
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9

Erlotinib Treatment of GBM Neurospheres

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GBM39 primary neurospheres were cultured in Dulbecco’s Modified Eagle Media Nutrient Mix F-12 (DMEM/F12, Invitrogen) supplemented with B27 (Invitrogen), Glutamax (Invitrogen), Heparin (1 μg/mL), Epidermal Growth Factor (EGF, 20 ng/mL, Sigma), Fibroblast Growth Factor (FGF, 20 ng/mL, Sigma) and 100 U/mL of penicillin and streptomycin (Gibco) in a humidified 5% CO2 (v/v) incubator, at 37 °C. For the drug treatment, 1 million cells were suspended in 10 mL of media containing 1 μM erlotinib (ChemieTek). The cells were then treated for designated periods of time and processed for tests.
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10

Cell Cycle Analysis by Flow Cytometry

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Cells were seeded on six-well plates at a density of 5 × 105 cells/well and allowed to adhere overnight. After treating the cells with DMSO, 10 μmol/l gefitinib, erlotinib, lapatinib, or canertinib (ChemieTek) for 24 h, cells were harvested, washed twice with PBS, and fixed with ice-cold 70% ethanol at 4°C for 24 h. Cells were centrifuged, washed once with PBS, and treated with 0.5 ml phosphate-citric acid buffer (192 ml 0.2 mol/l Na2HPO4 and 8 ml 0.1 mol/l citric acid, pH~7.8) at room temperature for 5 min to obtain a better defined sub-G1 peak. Cells were then centrifuged and resus-pended in 300 μl propidium iodide solution (15 μg propidium iodide and 3 Kunitz Units of RNase A in 1 × PBS) and incubated in the dark at room temperature for 30 min. Cell cycle distribution was measured with BD Accuri C6 flow cytometer (BD Biosciences, San Jose, California, USA) and analyzed with FlowJo software (Tree Star Inc., Ashland, Oregon, USA). Each sample was run in triplicate and the experiment was repeated one time.
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