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43 protocols using dmls microscope

1

Evaluating Methemoglobin and Heinz Bodies

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An additional aliquot of whole blood from each snake was used to prepare blood smears stained with hematoxylin and eosin. These samples were examined for Heinz bodies and hemolysis using a Leica DMLS microscope (Leica Microsystems CMS GmbH, Wetzlar, Germany). MetHb is converted into irreversible hemichromes within erythrocytes that lead to the precipitation of hemoglobin in the form of Heinz bodies37 (link). Heinz bodies cause lysis of erythrocytes by damaging the cell membrane38 (link) and cause extravascular hemolysis when erythrocytes containing Heinz bodies are phagocytosed by macrophages39 . These effects result in hemolytic anemia, further adding to the hypoxia-producing effects of methemoglobin.
The remaining blood sampled from each snake.was centrifuged for 3 min (3000 rpm at room temperature) and the plasma stored at −20 °C. Plasma samples were transported frozen to the NWRC in Fort Collins, Colorado, and stored at −80 °C prior to conducting biochemical analyses.
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2

Histometric Analysis of Furcation Region

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Morphometric changes were assessed in four hemimaxillae obtained from four animals in each group. Serial parasagittal sections (4 μm) were mounted on slides and stained with hematoxylin and eosin (H&E). Three sections were selected from each tooth. Histometric analysis consisted of determining the area of unmineralized tissue in the furcation region. In the furcation region, the delimitation of the area was according to Duarte et al. [24 (link)]. The area of interest included a 1,000-μm zone under the furcation roof in the interradicular region of the maxillary first molar. The total area of the interradicular region and the area of bony mineralized tissue were measured. To determine the area of unmineralized tissue, the bone tissue area was subtracted from the total area. The area of unmineralized tissue was then expressed as a percentage of the total area. The analysis was performed by a blinded and calibrated examiner using a Leica DMLS microscope (Leica microsystems, Wetzlar, Germany; ×200 magnification). Areas of interest were selected and photographed using a Leica DFC 300 FX digital camera (Leica microsystems). The photographs taken were archived in TIFF format. Histometric analysis was performed using the Image J 1.37b image analysis system (National Institutes of Health, Bethesda, MD, USA).
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3

Fluoro-Jade B Staining of Degenerating Brain Cells

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FJB was used to stain brain cells under degeneration [79 (link)]. Tissue 8 µm-thick sections were deparaffinized and hydrated. Slides were incubated in 80% EtOH-1% NaOH for 5 min, followed by 2 min in 70% ethanol and 2 min in distilled water. Sections were immersed in 0.06% K2MnO4 for 20 min, after distilled water washes, slides were incubated at 4 °C overnight in 0.001% Fluoro-Jade B (Millipore, AG310) previously diluted in 0.1% acetic acid [80 (link)]. Slides were dried, immersed in xylene and mounted with Eco-Mount (Biocare Medical, EM897L). Images were captured at 40× magnification on a Leica DM LS microscope with epifluorescence (Leica Microsystems, Wetzlar, Germany).
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4

Muscle Histological Analysis by HE and Picrosirius Red

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Animals were anaesthetized by an overdose of anesthesia (20 mg/kg xylazine) in a closed chamber. Muscle samples were dissected and then fixed in 10% neutral buffered formalin (NBF). Fixed samples were processed for paraffin embedding staining. Sections at 5 μm thickness were cut and stained with Hematoxylin and Eosin (HE) staining for morphological analysis. Collagen fibers were stained with picrosirius red staining kit according to the manufacturer’s protocol. Stained sections were examined using Leica DMLS microscope (Leica Microsystems, Wetzlar, Germany) and digital images were obtained by Leica ICC50 HD camera attached to the microscope.
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5

TUNEL Assay for Apoptosis Analysis

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A terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) assay was performed on the brain tissue sections. First, the sections were permeabilized for 2 minutes with Triton X-100 at 4°C. Subsequently, they were immersed in TUNEL reagent for 60 minutes at 37°C. Morphological analysis of the stained slides was conducted using the Leica QWin Image Analyzer System, paired with a Leica DMLS microscope (Leica Microsystems). After image capture, cells were manually counted to determine the number of cells per measured area.
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6

Hemocyte Classification in Animals

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Giemsa-stained hemocyte monolayers from n = 6 animals were examined with a Leica DM LS microscope (Leica Microsystems GmbH, Wetzlar, Germany) with 400× magnification. A total of n = 3303 cells were classified according to shape, size, and nucleus appearance into following types: spreading cells with lamellipodia-or filopodia-like protrusions (typically referred to as plasmatocytes), small cells with sparse cytoplasm and relatively large, often elongated nucleus (prohemocytes), large round to ovoid cells without crystalline inclusions, large round to oval cells with crystalline inclusions (crystal cells), small round to oval cells without protrusions, and small round to oval cells with protrusions. A total of n = 469 cells was additionally observed in n = 97 aggregates, each comprising more than three cells. These cells were omitted from cell type determination.
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7

Phytoalexin-Induced Resistance Against Pea Rust

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Two leaves at the 2 nd node per plant and genotype were used, with a total of six plants per treatment. Plants were treated with phytoalexins at concentrations previously founds in the leaves (i.e 8.0, 7.8, and 1.2 µg per leave of scopoletin, pisatin, and medicarpin respectively), by applying the solution with a pipette on the leaf surface and ensuring their complete absorption.
As a control, BTH and BABA solution were also applied to both genotypes (as reported above).
Twenty-four hours after the treatments, plants were inoculated with U. pisi as reported above.
Two days after inoculation (dai), leaves were harvested and stained according to Sillero and Rubiales (2002) . The different stages of the infection process were assessed using a phase contrast Leica DM LS microscope at X400 magnification (Leica Microsystems, Wetzlar, Germany). Necrosis was identified by uptake of Trypan blue by the plant cells.
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8

Immunocytochemical Detection of Dopamine Receptors

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Cells grown in 6-well plates were fixed for 30 min in PBS containing 4% paraformaldehyde and washed three times with PBS alone. Fixed cells were incubated with anti-dopamine D 1 and D 5 receptor antibody (1:200) at 4°C overnight. After incubation with the primary antibodies, cells were rinsed three times with PBS and incubated for 60 min at 37°C with 10 µg/ml of biotin-conjugated goat anti-rabbit or monkey anti-goat IgG (Jackson ImmunoResearch Laboratories, West Grove, PA). The cells were again washed three times with PBS and incubated for 20 min at room temperature with an avidin-biotin peroxidase complex (Elite ABC kit; Vector Laboratories Inc., Burlingame, California) followed by development for 10 min using 3-amino-9-ethylcarbazole and peroxide with a kit from Calbiochem. Images were obtained using a Leica DMLS microscope (Leica Microsystems, Buffalo Grove, IL) [21] .
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9

Gametocyte Maturation and Zygote Development Assay

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Equal volumes of mature gametocyte cultures were incubated with TSA at IC50 or IC90 concentrations or with 0.5% vol. ethanol for negative control for 1 h at 37°C. Subsequently, the cultures were activated with 100 μM XA and incubated for 30 min (macrogamete development assay) or 12 h (zygote development assay) at RT. An equal volume of each sample was then coated on Teflon slides and the cells were immunolabeled with anti-Pfs25 as described below. The numbers of Pfs25-positive macrogametes or zygotes, as distinguished by their round shapes, were counted for a total number of 1,000 erythrocytes, which were visualized by differential interference contrast in triplicate, using a Leica DMLS microscope at 1,000-fold magnification. Zygotes were distinguished from macrogametes by their larger nuclei through Hoechst nuclear stain 33342 (Molecular Probes). The student's t-test was used to determine significant differences between TSA-treated and untreated samples.
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10

Immunohistochemical Analysis of Lung Mast Cells

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Lung sections were deparaffinized and treated with antigen retriever (1X; Bio SB, Santa Barbara, California) for 5 min under microwave heating. Endogenous peroxidase was blocked incubating tissue with methanol-H2O2 (9:1) for 10 min. After three washes, unspecific sites were blocked using a background sniper (BIOCARE MEDICAL; Pacheco, California) for 30 min. Slides were washed and incubated with either a rabbit anti-human chymase antibody (Ab186417, Abcam; Cambridge, United Kingdom) or a mouse anti-tryptase antibody (Ab2378, Abcam; Cambridge, United Kingdom) for 2 h. After three washes, tissue was processed using a mouse/rabbit PolyDetector DAB (3–3′-diaminobenzidine)/HRP (horseradish peroxidase) brown detection system (BSB0219, Bio SB; Santa Barbara, California) following manufacturer´s instructions. Micrographs were acquired using a LEICA DMLS microscope with a 2.5X and 40X dry objectives equipped with a LEICA DFC295 camera and analysed using an automated image analyser (QWin Leica; Wetzlar, Germany).
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