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6 protocols using p rip1

1

Western Blot Analysis of Apoptosis and Signaling

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Western blotting analysis was performed as previously described [16 (link)]. Antibodies against the following proteins were used: Cleaved-caspase-3 (1:1000, #9661), PARP (1:1000, #9542), Bcl-2 (1:1000, #15071), survivin (1:1000, #2808), p-MLKL (1:1000, #91689), MLKL (1:1000, #14993), p-RIP3 (1:1000, #93654,) RIP3 (1:1000, #13526), p-RIP1 (1:1000, #65746), RIP1 (1:1000, #3493), LC3A/B (1:1000, #12741), beclin1 (1:1000, #3495), p62 (1:1000, #5114), p-PI3K (1:1000, #4228), PI3K (1:1000, #4257), p-AKT (1:1000, #4060), AKT (1:1000, #4691), p-mTOR (1:1000, #2974), mTOR (1:1000, #2983), p-p70S6K (1:1000, #9204), and p70S6K (1:1000, #2708), all from Cell Signaling Technology (Beverly, MA, USA); Cyclin D1 (1:1000, #sc-20044), β-actin (C4, 1:1000, #sc-47778), Cdk4 (1:1000, #sc-23896), and Cdk6 (1:1000, #sc-7961), all from Santa Cruz Biotechnology (Santa Cruz, CA, USA); and MMP13 (1:1000, NBP1-45723) from Novus Biologicals (Centennial, CO, USA). Protein bands were detected using the ProteinSimple detection system (ProteinSimple Inc., Santa Clara, CA, USA).
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2

Tumor Cell Lysis and Western Blot Analysis

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Tumor cells were lysed on ice with ice-cold radioimmunoprecipitation (RIPA) buffer containing a protease inhibitor cocktail (Sigma-Aldrich) for 30 min. The tumor tissues in RIPA buffer were treated by ultrasound. Then, soluble protein concentrations in lysate were determined by using a BCA protein assay kit (Thermo Scientific, Fremont, CA, USA). Western blot analysis was performed mainly as previously described [21 (link)]. The following antibodies were used: caspase-3, cleaved caspase-3, caspase-8, cleaved caspase-8 (9662S, 9661S, 4790S, 9496S respectively, Cell Signaling Technology, Danvers, MA, USA), RIP1 (610,458, BD Biosciences), pRIP1 (65746S, Cell Signaling Technology, Danvers, MA, USA), RIP3 (13,526, Cell Signaling Technology, Danvers, MA, USA), pRIP3 (ab209384, Abcam, Cambridge, UK), MLKL (ab184718, Abcam, Cambridge, UK), pMLKL (ab187091, Abcam, Cambridge, UK), JNK (9252, Cell Signaling Technology, Danvers, MA, USA), pJNK (4668, Cell Signaling Technology, Danvers, MA, USA), GAPDH (5174S, Cell Signaling Technology, Danvers, MA, USA) and corresponding secondary antibodies (Jackson ImmunoResearch, PA, USA).
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3

Western Blot Analysis of Cell Signaling

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Cells were lysed in buffer containing 0.5% NP-40 (Roche, 11754599001), 100 mM Tris-HCl (pH 7.4), and 300 mM NaCl and complemented with protease and phosphatase inhibitors [19 (link)]. Proteins were loaded by SDS-gel electrophoresis, and blots were probed with antibodies against glyceraldehyde 3-phosphate dehydrogenase(GAPDH) (6C5) (Millipore, NG1740950, dilution 1:5000), MLKL (D2I6N) (N° 14993, dilution 1:2500), p-MLKL (Ser358)(D6H3V) (N° 91689, dilution 1:2500), RIP1 (D94C12, dilution 1:1000) (N° 3493), prohibitin-1 (PHB1) (N° 2426S, dilution 1:1000) and p-RIP1 (Ser166)(D1L3S) (N° 65746, dilution 1:1000) from Cell Signaling, Lon peptidase 1 (LONP1) (Proteintech, 15440-1-AP, dilution 1:1000), p-RIP3 (Ser227) (EPR9627) (Abcam, ab209384, dilution 1:8000), and translocase of outer mitochondrial membrane 20 (TOMM20) (F-10) (Santa-Cruz, sc-17764, dilution 1:1000). Western blot images were analyzed by ImageJ software.
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4

Quantitative Western Blot Analysis

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Western blotting was performed according to a standard method, as described previously [22 (link)]. The following primary antibodies were used in this study: RIP1 (1 : 2000, cell signaling, 45726, USA), p-RIP1 (1 : 2000, cell signaling, 53286, USA), RIP3 (1 : 2000, Abcam, ab226297, USA), p-RIP3 (1 : 2000, Abcam, ab195117, USA), MLKL (1 : 2000, Abcam, ab243142, USA), p-MLKL (1 : 2000, Abcam, ab187091, USA), Caspase3 (1 : 2000, cell signaling, 9662, USA), cleaved Caspase3 (1 : 2000, cell signaling, 9664, USA), DOR (1 : 2000, Millipore, AB1560, USA), and β-actin (1 : 2000, Sigma, A5441, USA). Goat anti-rabbit IgG (1 : 4000) and goat anti-mouse IgG (1 : 4000) were purchased from Sigma. The protein bands were quantified by densitometry using ImageJ software, and protein expression was normalized to the expression of the internal control.
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5

Western Blot Analysis of Cell Signaling Proteins

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Western blotting was carried out as previously described.5 (link) Connexin32 Ab was purchased from Santa Cruz Biotechnology. The GAPDH Ab was obtained from Ray Antibody Biotech. β‐Tubulin Ab and HRP‐conjugated secondary Abs were acquired from Sigma‐Aldrich. The RIP1, RIP3, MLKL, p‐RIP1, p‐MLKL, and Src Abs were obtained from Cell Signaling Technology. Phosphor‐caspase 8 (Tyr380) primary Ab was from Abcam.
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6

Western Blot Analysis of Necroptosis Proteins

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Homogenized animal tissues and treated cells were lysed with RIPA lysis buffer (Roche, Basel, Switzerland) containing protease inhibitors and phosphatase inhibitors. BCA protein assay kit (Beyotime) was used to measure protein concentrations. Proteins were separated by SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes, which were blocked for 1 h and then blotted with specific primary antibodies against actin, GAPDH, RIP1, RIP3, MLKL, phosphor (P)-RIP1, P-RIP3, and P-MLKL (1:1000 dilution; Cell Signaling Technology, MA, USA) overnight at 4℃. The membranes were washed with TBS-T several times and further incubated with the secondary antibodies (1:1000 dilution) at 37℃ for 1 h. Finally, chemiluminescence images were developed with a SuperSignal Sensitivity Substrate kit (Thermo Fisher Scientific, MA, USA) and detected using a ChemiDoc XRS + imaging system (Bio-Rad, CA, USA).
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