The largest database of trusted experimental protocols

8 protocols using ab85543

1

Immunohistochemical Analysis of Renal Heparanase

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice kidney cortices were fixed in 4% formalin and embedded in paraffin. Antigen retrieval and deparaffinization were performed using the antigen retrieval solution for 20 minutes at 95 °C. All sections (5 μm) were blocked with 10% bovine serum albumin (BSA) and then incubated with monoclonal anti-mouse HS primary antibody (AMS Biotechnology, Milton Park, Abingdon, UK) in the dilution of 1:100 at 4 °C overnight. The rabbit anti-mouse heparanase primary antibody (Ab85543, Abcam, Cambridge, MA) which recognizes 65 kD precursor as well as the 50 kD and 8 kD subunits of heparanase and the heparanase primary antibody (MBS711555, My Biosource) reacting with 65 kD heparanase heterodimer were adopted to display glomerular heparanase expression. The sections were washed in 0.1 M PBS and stained with FITC (or rhodamine) conjugated secondary antibodies for 60 min at room temperature. DAPI was adopted to label nuclear DNA. After washing in 0.1 M PBS for three times, the sections were imaged by a Zeiss microscope (LSM-510, Carl Zeiss, Germany). Fluorescence intensity was quantified and analyzed by National Institute of Health (NIH) Image software.
+ Open protocol
+ Expand
2

Immunohistochemical analysis of HPSE and cell cycle markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry (IHC) staining of FFEP slides from patients and xenografts was conducted using an automated system (BenchMark XT, Roche). HPSE antibody (ab85543, Abcam, Cambridge, UK) and p27Kip1 antibody (25614-1-AP, Proteintech, Wuhan, China) at a concentration of 1:100, Ki67 antibody (GB111499, Servicebio, Wuhan, China) 1:200, Cyclin E2 (11935-1-AP, Proteintech) 1:500, Phospho-Akt (Ser473) antibody (4060, CST, MA, USA) 1:50 were used for immunohistochemistry analysis. Two independent pathologists blinded to the study evaluated the staining score of each clinical sample based on the staining extent (0, no staining; 1, weak staining; 2, moderate staining; 3, strong staining) and intensity (0, 0–5%; 1, 6% ~ 25%; 2, 26% ~ 50%; 3, 51% ~ 75%; 4, 75% ~ 100%) of tumor cells. HPSE positive represented more than 5% staining intensity of the tumor cells. Samples with staining extent and intensity scores greater than 1 were denoted as HPSE high, whereas those with scores less than 1 were denoted as HPSE low.
+ Open protocol
+ Expand
3

Crocin and Inflammatory Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Crocin (purity assay of ≥ 98%) was purchased from Shanghai Yuanye Biological Technology Co., Ltd. Methylthiazolyldiphenyl-tetrazolium bromide (MTT), LPS, 4,6-diamidino-2-phenylindole dihydrochloride (DAPI), fluorescein isothiocyanate (FITC)-albumin, and dimethyl-sulfoxide (DMSO) were obtained from Sigma-Aldrich. Rabbit monoclonal antibody to HMGB1 (ab79823), NF-κB p65 (ab32536), IκBα (ab32518), p-IκBα (ab133462), JNK (ab112501), ERK (ab184699), p38 (ab170099), p-ERK (ab201015), p-JNK (ab4821), p-p38 (ab47363), LaminB1 (ab133741), MMP-9 (ab38898), HPA (ab85543), SDC-4 (ab24511), Ly6g (ab25377), β-actin (ab8224), GAPDH (ab181602), MMP-9 inhibitor (MMP-9 inhib, ab142180), and FITC (ab25539) were acquired from Abcam Trading Company Ltd. Mouse polyclonal antibody to cathepsin L (CTL) was purchased from Santa Cruz Biotechnology. Mouse polyclonal antibody to HS was purchased from AMS Biotechnology (Switzerland, MA). Thrombomodulin/BDCA-3 was obtained from R&D Systems (USA). HRP-conjugated goat anti-rabbit IgG, goat anti-rabbit IgG/Alexa Fluor 594, and rabbit anti-goat IgG/Alexa Fluor were purchased from Beijing Biosynthesis Biotechnology Co., Ltd. Cathepsin L inhibitor (CTL inhib, CAS 167498-29-5) was obtained from Santa Cruz Biotechnology.
+ Open protocol
+ Expand
4

Fucoidan Signaling Pathway Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fucoidan was purchased from Sigma-Aldrich (St. Louis, MO, USA). The primary antibodies against heparanase (ab85543), VEGF (ab46154), and CD31 (ab28364) were purchased from Abcam Biotechnology (Cambridge, UK). The primary antibodies against FGF-2 (sc-79) and beta-actin (sc-47778) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The primary antibodies against ERK (#9102), phospho-ERK (#4377), PI3K (#4292), phospho-PI3K (#4228), AKT (#9272), and phospho-AKT (#4058) were purchased from Cell Signaling Technology (Beverly, MA, USA). Dylight 800-conjugated goat anti-mouse secondary antibodies (072-07-18-06) and Dylight 680-conjugated goat anti-rabbit IgG secondary antibodies (072-06-15-06) were purchased from KPL, Inc. (Gaithersburg, MD, USA).
+ Open protocol
+ Expand
5

Western Blot Analysis of Heparanase

Check if the same lab product or an alternative is used in the 5 most similar protocols
Purified HPSE was loaded onto a NuPAGETM 4–12% Bis-Tris pre-cast protein gel (ThermoFisher Scientific), resolved, and transferred onto a Nitrocellulose membrane (GE Healthcare, Chicago, IL, USA) using an XCell Sure LockTM electrophoresis system (ThermoFisher Scientific) in NuPAGE transfer buffer (ThermoFisher Scientific). The membrane was then blocked in 5% (w/v) skim milk in PBS for 1 h at room temperature. Incubation with the primary anti-HPSE antibody (2 μg/mL, rabbit polyclonal, AB85543, Abcam, Cambridge, UK) was performed at 4 °C for 16 h in 5% (w/v) skim milk in 0.1% (v/v) Tween-20/PBS. The membrane was then washed in 0.1% (v/v) Tween-20/PBS, three times. The bound primary antibody was detected by using a secondary donkey anti-rabbit IgG (0.5 μg/mL, NA934, GE Healthcare) in 5% (w/v) skim milk in 0.1% (v/v) Tween-20/PBS for 1 h at room temperature. Chemiluminescence detection was then performed using the Pierce ECL Western blotting substrate (ThermoFisher scientific).
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of HPSE Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were fixed in 10% buffered formalin at room temperature for 1 day and embedded in paraffin. Paraffin sections (thickness, 4 µm) were deparaffinized, rehydrated in a graded alcohol series and washed in distilled water. Following antigen retrieval with citrate buffer (pH 6.0), endogenous peroxidase was quenched by incubating with hydrogen peroxide blocking reagent (cat. no. ab64218, Abcam) for 5–10 min at room temperature and sections were blocked with goat serum (cat. no. ab7481, Abcam) for 2 h at room temperature. Primary antibody against HPSE (1:200; cat. no. ab85543; Abcam) was then applied at 4°C overnight. Following washing, the sections were incubated with peroxidase-conjugated secondary antibodies against rabbit IgG (1:2,000; cat. no. ab205718, Abcam) for 1 h at room temperature. Color was developed with DAB solution (Dako; Agilent Technologies GmbH). The sections were counterstained with hematoxylin for 10 sec at room temperature prior to coverslipping. The sections were viewed under a light microscope (Olympus Corporation; magnification, ×40). For each section, ≥5 random fields were examined. The staining intensity of HPSE was scored as 0 (absent), 1 (weak), 2 (moderate) and 3 (strong) in a double-blinded manner. HPSE expression was categorized as low (score of 0–1) or high (score of 2–3).
+ Open protocol
+ Expand
7

Immunohistochemistry of Heparanase and ET-AR

Check if the same lab product or an alternative is used in the 5 most similar protocols
The paraffin-embedded tissues were used for immunohistochemistry with heparanase (AB85543, Abcam, dilution 1:200), ETAR (SC33535, Santa Cruz, dilution 1:100), and Ki-67 (CRM 325 B, Biocare Medical, dilution 1:100) antibodies. Paraffin sections, 4 μm in thickness, were placed on poly-L-lysine-coated slides. After deparaffinization, endogenous peroxidase was reduced by incubation with 3% H2O2 in phosphate buffer saline for 5 minutes. The secondary antibodies used were EnVision+System-HRP anti rabbit (K4002, Dako) for heparanase and the ETAR and Histofine SAB-PO (MULTI) (414171F, Nichirei) for Ki-67. The chromogen used was 3,3’-diaminobenzidine. Hematoxylin was utilized for counterstaining.
+ Open protocol
+ Expand
8

Heparanase Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Control and stimulated SUM149 cells were lysed in RIPA buffer containing protease inhibitor cocktail as we previously described [58 (link)]. Total protein content was determined with BCA method and 50 μg protein /lane was loaded into 10% SDS-PAGE. After the semi-dry transfer step, nitrocellulose membrane was blocked with 5% skimmed milk/TBST solution, washed thrice with TBST, and probed with anti-human heparanase antibody (1:500; ab85543, Abcam, UK) overnight at 4C°. Following 1 h incubation at room temperature with HRP-conjugated secondary antibody, the membrane was subjected to a chemiluminescence reaction and signal quantification was performed with NIH ImageJ software. Subsequently, the membrane was stripped and incubated with anti-GAPDH (1:1000, Santa Cruz Biotechnology, Texas, USA) as housekeeping controls for normalization.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!