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7 protocols using sec31a

1

Immunocytochemistry Antibody Protocol

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The following antibodies were used in immunocytochemistry: collagen VII (rabbit anti–human [Abcam]; mouse anti–human [Sigma-Aldrich]), ERGIC-53 (mouse anti–human; Santa Cruz Biotechnology, Inc., and Enzo Life Sciences), Sec31A (mouse anti–human; BD), TANGO1 (rabbit anti–human; Sigma-Aldrich), HSP47 and calreticulin (goat anti–human; Enzo Life Sciences), HA (mouse; BioLegend), SAR1 (mouse anti–human; Abcam), TGN46 (Bio-Rad Laboratories), and mannosidase II (rabbit anti–human; Bio-Rad Laboratories and Merck). Mounting media used in confocal and STED microscopy were either Vectashield (Vector Laboratories) or ProLong (Thermo Fisher Scientific).
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2

Antibody Characterization Protocol

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The following antibodies were used procollagen VII (rabbit anti–human [Abcam]; mouse anti–human [Sigma-Aldrich]), Sec31A (mouse anti–human; BD), TANGO1 (rabbit anti–human; Sigma-Aldrich), sec16A (rabbit anti-human; Sigma-Aldrich), calreticulin (goat anti–human; Enzo Life Sciences), HA (mouse; BioLegend), TGN46 (sheep polyclonal, Bio-Rad), HA (mouse monoclonal, BioLegend; rat monoclonal BioLegend). Mounting media used in confocal and STED microscopy were either Vectashield (Vector Laboratories) or ProLong (Thermo Fisher Scientific, Waltham, Massachusetts).
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3

Antibody Characterization in Cell Biology

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The following antibodies were used collagen VII (rabbit anti–human [Abcam]; mouse anti–human [Sigma-Aldrich]), ERGIC-53 (mouse anti–human; Santa Cruz Biotechnology, Inc., and Enzo Life Sciences), Sec31A (mouse anti–human; BD), TANGO1 (rabbit anti–human; Sigma-Aldrich; rabbit anti-human in-house), HSP47 and calreticulin (goat anti–human; Enzo Life Sciences), HA (mouse; BioLegend), SAR1 (mouse anti–human; Abcam), β-tubulin (mouse anti-human; SIGMA-Aldrich), β-actin (mouse anti-human; SIGMA-Aldrich), NBAS (rabbit anti-human SIGMA-Aldrich), RINT1 (rabbit anti-human; SIGMA-Aldrich and goat anti-human (Santa Cruz Biotechnology), ZW10 (rabbit anti-human; Abcam), Sec23 (rabbit anti-human/mouse/rat; Abcam), cTAGE5 (rabbit anti-human Atlas antibodies, mouse anti-human Santa Cruz Biotechnology), TGN46 (sheep polyclonal, Bio-Rad), HA (mouse monoclonal, BioLegend; rat monoclonal BioLegend), FLAG (mouse monoclonal, rabbit, SIGMA-Aldrich; goat, Novus) HSP60 (mouse anti-human SIGMA-Aldrich), c-myc (mouse monoclonal, rabbit, SIGMA-Aldrich). Mounting media used in confocal and STED microscopy were either Vectashield (Vector Laboratories) or ProLong (Thermo Fisher Scientific, Waltham, Massachusetts).
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4

Antibodies for Western Blotting and Immunofluorescence

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Antibodies used in Western blotting and immunofluorescence microscopy were as follows: EGFP (Roche); TANGO1 and α-tubulin (Sigma-Aldrich); cTAGE5 (Atlas Antibodies); apolipoprotein B (Tebu-bio); apolipoprotein E, GRP78/BIP, PDI, and LAMP1 (Abcam); Sec31A (BD); calreticulin (Novus Biologicals); and LC3, ERGIC-53, and collagen XII (Santa Cruz). For the coimmunoprecipitation experiments, besides the anti-TANGO1 and anti-cTAGE5 antibodies, an anti-MIA2 antibody (Antigenix America) was used.
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5

Antibody Panel for Cell Biology Analysis

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Antibodies used in western blotting and immunocytochemistry; Col VII and ATP5A1 (Abcam, Cambridge UK), Syntaxin 18 (Santa Cruz Biotechnology, Dallas, USA), ERGIC-53 (Santa Cruz Biotechnology, Dallas, USA; Enzo Life Sciences, Farmingdale, New York, USA), Sec31A (BD Biosciences), TANGO1, YKT6, c-Myc (9E10), c-Myc and alpha-tubulin (SIGMA-Aldrich, St. Louis, MO, USA), Mannosidase II (Merck, Kenilworth, NJ, USA), TGN46 (abd serotec, Kidlington, UK), HSP47 and Calreticulin (Enzo Life Sciences, Farmingdale, New York).
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6

Immunoblotting and RT-qPCR Techniques

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Immunoblotting studies were conducted as described previously (43 (link)). The following validated antibodies were used: Sec31a (BD Sciences; 612351), Sec23a (Thermo Scientific; PA5-28984), TFG (Novus Biologicals; NBP2-62212), β-actin (Sigma; A1978), GAPDH (Proteintech; 60004-1), and GRP78/BIP (Proteintech; 11587-1-AP).
RNA extraction was performed using TRIzol (Invitrogen), followed by sequential precipitations using ethanol and lithium chloride. Production of cDNA was performed using a Superscript III First Strand RT-PCR kit (Invitrogen), and RT-qPCR experiments were performed using a CFX384 Touch Real-time PCR detection system (Bio-Rad) and Applied Biosystems Power SYBR Green PCR Master Mix (Thermo Scientific). The following primers were used: sXBP1 F: CCCTCCAGAACATCTCCCCAT; sXBP1 R: ACATGACTGGGTCCAAGTTGT; GAPDH F: AGCCACATCGCTCAGACAC; GAPDH R: GCCCAATACGACCAAATCC.
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7

Immunofluorescence Antibody Panel Protocol

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The following antibodies were used procollagen VII (rabbit anti-human [Abcam]; mouse anti-human [Sigma-Aldrich]), Sec31A (mouse anti-human; BD), TANGO1 (rabbit antihuman; Sigma-Aldrich), sec16A (rabbit anti-human; Sigma-Aldrich), calreticulin (goat antihuman; Enzo Life Sciences), HA (mouse; BioLegend), TGN46 (sheep polyclonal, Bio-Rad), HA (mouse monoclonal, BioLegend; rat monoclonal BioLegend). Mounting media used in confocal and STED microscopy were either Vectashield (Vector Laboratories) or ProLong (Thermo Fisher Scientific, Waltham, Massachusetts) .
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