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8 protocols using 4 pba

1

Modulating Endoplasmic Reticulum Stress in TC-1 Cells

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TC-1 cells were randomly assigned to sham, 4-PBA, MS, and MS + 4-PBA groups. Cells in the sham group received PBS treatment as a control; cells in the 4-PBA group were cultured in the medium containing 5 mM 4-PBA (Selleck, USA) for 2 h; cells in the MS group received MS treatment; cells in the MS + 4-PBA group were cultured in the medium containing 5 mM 4-PBA (Selleck, USA) for 2 h and then treated with MS for 24 h.
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2

Intrathecal Autophagy and ER Stress Modulation

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Intrathecal injection was performed as described previously (Liu Y.D. et al., 2019 (link)). Briefly, laminectomy was performed at the L5 vertebra under anesthesia. PE-5 catheter was inserted into the subarachnoid space of the spinal cord at L4 level. The rapamycin (autophagy inducer, CST, 0.2 μg/10 μl), 3-MA (autophagy inhibitor, Selleck, 50 μM), 4-PBA (ER stress inhibitor, Selleck, 200 μM), and tunicamycin (ER stress inducer, Selleck, 25 μM) were intrathecally administered 10 μl on operation day and postoperative day 2, 4, 6, 8, 10, 12, and 14 in SNL + RAP, SNL + 3-MA, SNL + 4-PBA, and SNL + TM group, respectively. All the groups without specific noted harvested spinal cord (L3–L5) at postoperative 14 day. The sham + C group received sham operation and catheter implantation procedure. SNL + C group received spinal nerve ligation and catheter implantation. The sham + C and SNL + C groups received 10 μl saline via catheter on operation day and postoperative day 2, 4, 6, 8, 10, 12, and 14.
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3

Murine Muscle Progenitor Cells Culturing and Stimulation

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According to the previous description, murine MPCs were collected from the hind limb muscle of neonatal B6 mice (Sciorati et al., 2015 (link)). MPCs were cultured in Dulbecco’s modified Eagle’s medium Nutrient/F12 (DMEM/F12, Hyclone, United States) containing with 10% fetal bovine serum (FBS, Gibco, United States), 100 U/mL penicillin, and 100 μg/mL streptomycin sulfate in a 5% CO2-humidified chamber (Heraeus, Germany) at 37°C. For differentiation studies, MPCs were cultured in differential medium (DM) (DMEM, added with 2% horse serum) for 72 h. For pro-inflammatory stimuli, MPCs were treated with IFN-γ (60 ng/mL, R&D, United States) for 24 h (Nozaki et al., 2010 (link)). For inhibiting UPR and the branches, the cells were co-cultured with 4-PBA (10 mM, Selleck, China), 4μ8c (50 μM, Selleck, China), and GSK2606414 (1 mM, Selleck, China), respectively, under pro-inflammatory stimuli. TM (1 μg/mL, Santa Cruz, United States), or TG (0.2 mmol/L, Santa Cruz, United States) were used for 4 h as positive control for testing UPR activation and as UPR activators. Cells were cultured in DM with or without 20 mM SB202190 (Sigma, United States) to blocking p38 activation in IFN-γ medium.
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4

Intra-ACC Drug Administration Protocol

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For intra-ACC drug administration, ACC catheterization was performed under anesthesia with pentobarbital sodium (60 mg/kg) according to our previous report [27 (link)]. Briefly, the head was fixed on a stereotactic apparatus in the prone position, and a 1-cm longitudinal incision was made in the middle of the head to expose the skull. Two holes were drilled on each side (Bregma forward, 1.7 mm; lateral, 0.6 mm) and a trocar (Shenzhen Ruiwode Life Science and Technology Co., Ltd, Guangdong, China) was inserted. Two small screws were installed superficially in the occipital bone, dental methyl methacrylate was used to fix the trocar with screws, and the rats were administered a subcutaneous injection of 80,000 U penicillin to prevent infection. CCI was performed 7 days after catheterization. The BIP and IRE-1 inhibitors 4-PBA and Kira-6 were purchased from Selleck (Houston, TX, USA) and dissolved in 10% dimethyl sulfoxide (DMSO). The rats were randomly assigned to the following four groups: CCI, CCI + DMSO, CCI + 4-PBA, and CCI + Kira-6. Both 4-PBA and Kira-6 were dissolved in 10% DMSO at a concentration of 20 µg/µL. Drugs or vehicle were bilaterally injected into the ACC (1 µL per side) from days 0 to 6 after CCI surgery.
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5

Aggregosome detection in stem cells

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The PROTEOSTAT Aggresome Detection kit (Enzo Life Sciences, Farmingdale, NY, USA) was used to detect protein aggregates in NPCs or NGN2-neurons according to the manufacturer’s instructions. Briefly, protein aggregates in NPCs or neurons were evaluated using red fluorescent molecular rotor dye to specifically detect denatured protein cargo within aggresome and aggresome-like inclusion bodies in fixed and permeabilized cells. Nuclei were counterstained with Hoechst 33342. The cytoplasm was stained with HCS CellMask Deep Red Stain. For drug treatment experiments, cells were treated with vehicle, 4-PBA (100 µM), TMP-269 (0.1 µM; Selleck, Houston, TX, USA), tasquinimod (0.1 µM, Selleck), or valproic acid (10 µM; Wako) from days 0 to 14, or with 3-methyladenine (3-MA, 10 µM; Sigma) for 24 h prior to aggregation analysis. All images were taken by the IN Cell Analyzer 6000 and were analysed using the IN Cell Developer Toolbox 1.9. Nuclei and cells were defined by Hoechst 33342 and CellMask, and the relative intensities of aggregates per cell were evaluated.
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6

Irisin's Calcium Signaling Pathways

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Irisin was purchased from Cayman Chemical (Ann Arbor, MI, USA). Angiotensin II (Ang II), BAPTA-AM and 4-PBA were purchased from Selleck Chemicals (Houston, TX, USA). Alezet Osmotic pump (2004) was purchased from Alzet (Cupertino, CA, USA). Transwell for migration was purchased from Corning (NY, USA). CCK8 was purchased from Biomake (Houston, TX, USA). The Irisin ELISA kits were purchased from Phoenix Pharmaceuticals Inc. (Burlingame, CA, USA). Compound C and HY-W007355 were purchased from MedChemExpress (NJ, USA). Edu cell proliferation kit, Fluo-3 AM Calcium probe and Crystal violet dye were obtained from Beyotime Biotechnology (Shanghai, China). anti-RYR2 was purchased from Abcam (Waltham, MA, USA); anti-IP3R, anti-SERCA, anti-p-SERCA, anti-PLN, anti-p-PLN were obtained from Abclonal (Wuhan, China); anti-p-CaMK II, anti-CaMKII were purchased from Santa Cruz (Dallas, TX, USA); anti-Ki67, anti-Bip, anti-ATF6, anti-IRE1α, anti-p-eif2α, anti-eif2α, anti-p-AMPK, anti-AMPK, anti-p-ERK, anti-ERK, anti-p-p38, anti-p38, anti-p-JNK, anti-JNK and anti-β-tubulin were obtained from Cell Signaling Technology (Danvers, MA, USA); anti-αV/β5 antibody was obtained from Millipore (Boston, MA, USA). All the secondary antibodies used in this study were provided by Zhongshan Golden Bridge Biotechnology (Beijing, China). All chemicals and reagents used were of analytically pure.
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7

Silica Nanoparticle-Induced ER Stress in RAW264.7 Macrophages

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Mouse macrophage cell line, RAW264.7 cells were cultured in DMEM (ThermoFisher, USA) with 10% fetal bovine serum (FBS; ThermoFisher, USA) at 37 °C in a 5% CO2 incubator. SiNPs were diluted by DMEM to appropriate concentrations, and an ER stress inhibitor, 4-phenylbutyric acid (4-PBA; Selleck, USA) was applied (3 mM, 6 h). The dosage of SiNPs was set according to the cell viability analysis by using MTT assay. Since a significant acute toxicity (24 h) was seen in SiNPs-treated group at a concentration of 50 μg/ml, while simultaneously with cell viability > 70%, the exposure mode of SiNPs (50 μg/ml, 24 h) was used in the subsequent in vitro experiments. Similarly, the application of 4-PBA was set up through MTT assay and also verified as evidenced by an efficient inhibition on the up-regulated expressions of Bip and CHOP induced by SiNPs. See details in the supplementary Fig. S4. After SiNPs with or without 4-PBA treatment, cells were harvested for the following measurement.
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8

Silica Nanoparticle Cytotoxicity Modulated by ER Stress

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Mouse macrophage cell line, RAW264.7 cells were cultured in DMEM (ThermoFisher, USA) with 10% fetal bovine serum (FBS; ThermoFisher, USA) at 37°C in a 5% CO2 incubator. SiNPs were diluted by DMEM to appropriate concentrations, and an ER stress inhibitor, 4-phenylbutyric acid (4-PBA; Selleck, USA) was applied (3 mM, 6 hours). The dosage of SiNPs was set according to the cell viability analysis by using MTT assay. Since a signi cant acute toxicity (24 hours) was seen in SiNPs-treated group at a concentration of 50 μg/ml, while simultaneously with cell viability > 70%, the exposure mode of SiNPs (50 μg/ml, 24 hours) was used in the subsequent in vitro experiments. Similarly, the application of 4-PBA was set up through MTT assay and also veri ed as evidenced by an e cient inhibition on the up-regulated expressions of Bip and Chop induced by SiNPs. See details in the supplementary Fig. S3. After SiNPs with or without 4-PBA treatment, cells were harvested for the following measurement.
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