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15 protocols using anti p foxo1

1

Immune Signaling Profiling in COVID-19 Recovery

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PBMCs from COVID-19 recovered patients and healthy donors were incubated with 10 μg/ml biotin-F(ab′)2 anti-human Ig(M + G) on ice for 30 min, plus 20 μg/ml streptavidin on ice for 10 min, and then activated at 37 °C for indicated times. Cell lysates were used for electrophoresis in SDS–polyacrylamide gel, electrotransferred onto a nitrocellulose membrane, and then probed with the following specific antibodies: anti-pCD19 (Cat# 3571S, Cell Signaling Technology, USA), anti-CD19 (Cat# 90176, Cell Signaling Technology, USA), anti-pBtk (Cat# ab52192, Abcam, USA), anti-Btk (Cat# 8547S, Cell Signaling Technology, USA), anti-pPI3K (Cat# 4228S, Cell Signaling Technology, USA), anti-pAkt (Cat# 4060L, Cell Signaling Technology, USA), anti-pFoxO1 (Cat# 9461S, Cell Signaling Technology, USA), anti-pmTOR (Cat# 5536S, Cell Signaling Technology, USA), and anti-pS6 (Cat# 4856S, Cell Signaling Technology, USA). After incubated relative secondary antibodies, immunoreactive bands were presented and captured with the ChemiDoc XRS + imaging systems (Bio-Rad). β-actin or GAPDH was used as the loading control.
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2

Immunostaining Markers for Cell Types

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Anti-CLDN4 (mouse), anti-CLDN5 (mouse (tissues) and rabbit (cell culture)), anti-human ZO1 (rabbit), and anti-GFAP (rat) were from Invitrogen (Carlsbad, California, USA). Anti-CDH5 (goat) was from R&D systems (Minneapolis, Minnesota, USA). Anti-human CDH5 (mouse) and anti-human DHH (H-85) (rabbit) were from Santa Cruz Biotech (Santa Cruz, California, USA). Anti-FGB (rabbit) and anti-human PECAM1 (mouse) were from Dako (Carpinteria, California, USA). Anti-ALB (sheep) and anti-MBP (rat) were from Abcam (Cambridge, Massachusetts, USA). Anti-CD45 (rat) was from eBioscience (San Diego, California, USA). Anti-RNA binding fox-1 homolog 3 also known as neuronal nuclei antigen (NEUN) (rabbit) and anti-AQP4 (rabbit) were from Millipore (Billerica, Massachusetts, USA). Anti-LAM (rabbit) was from Sigma Aldrich (St. Louis, Missouri, USA). Anti-ZO1 (rabbit) was from Life Technologies (Grand Island, New York, USA). Anti-FOXO1 (rabbit), anti-p-FOXO1 (rabbit), and anti-β-ACTIN (rabbit) were from cell signaling (Danvers, Massachusetts, USA).
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3

Lentiviral Regulation of TSCC Cell Signaling

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The lentiviral constructs were used to transfect the TSCC cell lines; 2 weeks later, the cells were selected via selection pressure using puromycin. The RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) and Complete Lysis‐M reagent (Roche, USA) were used to prepare the nuclear extracts or whole cell lysates. Later, the protein concentrations were measured through the BCA assay (ThermoFisher Scientific, Waltham, MA). Afterwards, proteins would be isolated through 10% SDS‐PAGE, followed by transfer to the PVDF membranes. The anti‐SOX8, anti‐GOLPH3, anti‐TFAP2A, anti‐Histone3, anti‐p‐PI3K, anti‐PI3K, anti‐p‐AKT, anti‐AKT, anti‐p‐GSK3β, anti‐GSK3β, anti‐FOXO1, anti‐p‐FOXO1, anti‐β‐catenin, anti‐N‐cadherin, anti‐E‐cadherin, anti‐Snail, anti‐Vimentin, and anti‐GAPDH antibodies were provided by Cell Signaling Technology (Danvers, MA). Meanwhile, the anti‐c‐Myc rabbit antibodies were provided by Abcam (Cambridge, UK).
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4

Protein Expression Analysis by Western Blot

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Total protein was extracted from whole cells and 20 μg isolated protein was separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and electroblotted onto a polyvinylidene fluoride membrane (Bio-Rad Laboratories, Hercules, CA, USA). The membrane was probed with anti-SOX9 (56KD) mouse monoclonal antibody (1:500; #ab76997, Abcam, Cambridge, MA, USA), anti-p-Akt(#4056), anti-Akt(#9272), anti-p21(#2947), anti-p27(#3686), anti-CyclinD1(#2922), anti-p-FOXO1(#9461), anti-FOXO1(#9454), anti-p-FOXO3(#9465) or anti-FOXO3(#2472) (Cell Signaling, Danvers, MA, USA). The membranes were then stripped and reprobed with an anti–α-tubulin mouse monoclonal antibody (1:1000; #2125; Cell Signaling, Danvers, MA, USA) as the loading control. Bound antibodies were visualized using an enhanced chemiluminescence system (Amersham Pharmacia Biotech, Dübendorf, Switzerland).
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5

Immunostaining and Western Blotting Antibodies

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Anti-dystrophin (ab15277, 1:100 for immunostaining) and anti-VDAC1 (ab15895, 1:1000 for western blotting hereinafter) antibodies were purchased from abcam; anti-pY (4G10, 1:1000) antibody was from Upstate; and the others, anti-p-Akt (9271, 1:1000), anti-Akt (9272, 1:1000), anti-p-AMPKα (2531, 1:1000), anti-AMPKα (2532, 1:1000), anti-p-AS160 (4288, 1:1000), anti-AS160 (2447, 1:1000), anti-p-FoxO1 (9461, 1:1000), anti-FoxO1 (9454, 1:1000), anti-FoxO4 (9472, 1:1000), anti-GAPDH (2118, 1:5000), anti-LC3B (2775, 1:1000), anti-p-mTOR (2971, 1:1000), anti-mTOR (2972, 1:1000), antibodies were from Cell Signaling. Secondary antibody for immunostaining (Alexa 594 Goat Anti-Rabbit; A11037, 1:400) was purchased from Invitrogen, and those for western blotting (HRP-linked Anti-Mouse [from Sheep] and Anti-Rabbit [from donkey]; NA931 and NA934 respectively, both 1:2000) were from GE Healthcare Life Sciences.
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6

Western Blot Analysis of Epithelial-Mesenchymal Transition

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Proteins from cell and tissue lysates were separated by SDS-polyacrylamide gel electrophoresis (PAGE) and electrotransferred onto a polyvinylidene difluoride (PVDF) membrane (Pall Corp, Port Washington, NY). Then the membranes were blocked with 5% skimmed milk and incubated using primary antibodies against IMPDH2 (1:1000 dilution), anti-GAPDH, anti-GSK3β, anti-p-GSK3β, anti-AKT, anti-p-AKT (Ser473), anti-FOXO1, anti-p-FOXO1, anti-mTOR, anti-p-mTOR (Cell signaling Technology, Beverly, MA), E-cadherin (1:1000 dilution,#SAB4503751; Sigma Aldrich), β-catenin (1:1000 dilution, #C2206; Sigma Aldrich), Vimentin (1:1000 dilution, #V6630; Sigma Aldrich), Snail (1:1000 dilution, #SAB1306281; Sigma Aldrich), followed by incubation with the appropriate secondary antibodies (anti-rabbit IgG, 1:3000 dilution, #7074; Cell Signaling). An enhanced chemiluminescence (Pierce, Rockford, IL, USA) was used to detect signals.
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7

Protein Expression Analysis Protocol

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Tissues were dissolved in RIPA buffer (150 mM sodium chloride, 1.0% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris, protease and phosphatase inhibitor mixture (Roche Diagnostics)). Protein concentrations were determined using a BCA assay kit (Pierce Diagnostics). Protein was separated by 10% (wt/vol) SDS/PAGE, transferred to a PVDF membrane (Millipore), blocked in 5% (wt/vol) skim milk in TBST (0.02 M Trisbase, 0.14 M Vehicle, 0.1% Tween 20, pH 7.4), and incubated with primary antibodies overnight at 4 °C and then incubated with secondary antibodies conjugated with HRP. The following primary antibodies were used: anti-UCP1 (ab10983, Abcam), anti-PGC1ɑ (ab54481, Abcam), anti-OXPHOS (ab110413, Abcam), anti-Mas1 (AAR-013, Alomone labs), anti-Akt (#9272, cell signaling technology), anti-p-Akt308 (#13038, cell signaling technology), anti-FoxO1 (#2880, cell signaling technology), anti-p-FoxO1 (#84192, cell signaling technology), anti-PKA (#4782, cell signaling technology), anti-p-PKA (#9621, cell signaling technology), anti-ACE2 (#92485, cell signaling technology), and actin (#4970, Cell Signaling Technology). Signals were detected with Super Signal West Pico Chemiluminescent Substrate (Pierce).
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8

Immunoblotting of B Cell Signaling

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B cells cultured under various conditions were harvested and cell lysates were prepared in lysis buffer. The lysate was resolved on a 10% reducing SDS-polyacrylamide gels and transferred to a polyvinylidene difluoride membrane. After blocking with Tris-buffered saline (pH 7.4) containing 5% dried skimmed milk, the membrane was incubated with antibodies, followed by probing with HRP-conjugated anti-rabbit or -mouse antibody (Sigma). The bands were detected by chemiluminescence with ECL detection reagents (Life Technologies). Antibody to Phospho-STAT6 (Tyr641, 56,554), anti-STAT6 (5,397), anti-p-PKA C(4,781), anti-PKA C-α (5,842), anti-p-CREB (9,198), anti-CREB (9,197), PI3 Kinase p110 δ 34,050, anti-p-Akt (Ser473, 4,060), anti-Akt (4,685), anti-p-FoxO1 (Ser256, 9,461), anti-FoxO1 (2,880), anti-p-FoxO3a (Ser253, 13,129), anti-FoxO3a (12,829), anti-PPARγ (2,443) were from Cell Signaling Technology (Danvers, MA, USA). Anti-ubiquitin (PTM-1106) was from PTM BIO (Beijing, China). Anti-β-Actin (66009-1-Ig) was from Proteintech.
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9

Western Blot for Protein Expression

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Cells were lysed in RIPA buffer, supplemented with SigmaFastTM protease and phosphatase inhibitors (Sigma Aldrich; UK), and protein concentration was determined by the Pierce BCA Protein Assay (ThermoFisher Scientific; UK). Protein samples (30 µg) were separated by SDS-PAGE at 150 V on 10% Tris-Glycine mini gels (ThermoFisher Scientific, UK) for 60–90 min. Resolved proteins were transferred to HybondTM polyvinylidene difluoride (PVDF) membrane (0.45 µm; GE Healthcare; UK) by semi-dry transfer (0.8 mAmps/cm2). Membranes were blocked (5% milk or 2.5% BSA; 1 h) and probed with primary antibodies at 4 °C overnight (anti-β-actin 1:5000 (Sigma Aldrich; UK); anti-FOXO1 1:1000; anti-pFOXO1 1:500; anti-CPT1A 1:1000 (Cell Signaling Technology; UK)) followed by incubation with HRP-conjugated secondary antibodies (1:10,000 in 0.2% BSA; 1 h (ThermoFisher Scientific; UK). Proteins were detected by enhanced chemiluminescence (ECL) using Western Lightning plus ECL reagent (Perkin-Elmer; UK). Band densities were semi-quantified by densitometry performed using ImageJ software and normalised to β-actin loading control.
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10

Western Blot Analysis of Protein Signaling

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Cells or tissues were lysed in RIPA lysis buffer in the presence of proteinase
inhibitors. Protein samples were separated by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose
membrane. The membranes were then blocked in 5% milk (in tris-buffered
saline with Tween 20) for 1 h at room temperature and then incubated
with primary antibodies [anti-FAM3A (Sigma-Aldrich, SAB1102488), anti-pAkt (Cell
Signaling Technology, 9271), anti-Akt (Cell Signaling Technology, 9272),
anti-pFOXO1 (Cell Signaling Technology, 9461), anti-FOXO1 (Cell Signaling
Technology, 2880), anti-PDX1 (ABclonal, A3070), anti-β-actin (ZSGB
Biotechnology, TA-09), and anti-GAPDH (Cell Signaling Technology, 5174)]
overnight at 4 °C. On the next day, the membranes were washed and
incubated with secondary antibodies for 2 h. Blots were visualized using
enhanced chemiluminescence.
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