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5 protocols using tnfr1

1

Immunohistochemical Analysis of Apoptosis Markers

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Immunohistochemistry (IHC) was conducted as previously described [15 (link)]. Tissues were deparaffinized, rehydrated, and incubated at room temperature in 0.3% H2O2 to block endogenous peroxidase and in blocking solution for nonspecific binding. Primary antibody were applied to sections overnight at 4°C. Afterwards, tissues were incubated with anti-mouse HRP conjugated (Abcam, USA) secondary antibody for 1 h at room temperature. Then enzyme development was performed with DAB/H2O2 complex for 10 min at room temperature and in the absence of light which provides a brownish precipitation. The primary antibodies specific for Fas, Fasl (epitomics, USA) ,TNF-α and TNFR1(Proteintech group,USA) were used at working dilution 1:50, 1:100, 1:50 and 1:200 respectively. Stained (brown) cells were quantified as number of positive cells. To evaluate the intensity of antigen immunoreactivity we examined the percent of positive staining urothelial cells in 10 fields at random per rat per antibody under 400 × magnification.
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2

Investigating TNFα-induced NF-kB Signaling

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Recombinant human TNFα (AF-300-01A) was purchased from PeproTech. Cisplatin (HY-17394) was from MedChemExpress, QNZ (S4902) and Cycloheximide (CHX) was from Selleck. The primary antibodies used in this work are as follow: KIAA1522 (WB, 1:1000; IHC, 1:200; HPA032050, Sigma ImmunoChemicals, St Louis, MO, USA), Phospho-NF-kB p65 (Ser536) (WB, 1:1000; CST, 3033); NF-κB p65 (WB, 1:1000; CST, 8242), Phospho-IkBα (Ser32) (WB, 1:1000; CST, 2859), IkBα (WB, 1:1000; CST, 4814), Phospho-IKKα/β (Ser176/180) (WB, 1:1000; IHC, 1:150; CST, 2697), IKKα (WB, 1:1000, CST, 11930), TNFR1 (WB, 1:1000, Proteintech, 21,574–1-AP), TNFR2 (WB, 1:1000; IHC, 1:50, Proteintech, 19,272–1-AP), GAPDH (WB, 1:1000, Santa Cruz, sc-25,778), β-actin (WB, 1:2000, Santa Cruz, sc-47,778), Ki67 (IHC, 1:200, GeneTex, GTX16667), cleaved caspase-3 (IHC, 1: 500, CST, 9664).
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3

Protein Expression Analysis of Cancer Cells

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After various treatments as indicated, cancer cells were harvested, and the total protein was lysed in radio immunoprecipitation assay (RIPA) lysis buffer (Beyotime, Shanghai, China) and then quantified by a BCA kit (Epizyme, Shanghai, China). Equal amounts of proteins were resolved on 10%-12.5% SDS-PAGE gels, followed by transferring the proteins to an Immobilon PVDF Membrane (Merck Millipore Ltd, Tullagreen, Ireland). PVDF membranes with proteins were blocked with 5% skim milk for 1 hour, incubated with primary antibodies overnight at 4°C, and then conjugated with secondary antibodies (Cell Signaling Technology, Danvers, MA, USA) at room temperature for 1 hour. Signals were visualized by ECL reagent (Epizyme, Shanghai, China) and photographed by Tanon 5200 visualizer (Tanon, Shanghai, China).
The primary antibodies used are as follows: p27, p21, Cyclin D1, PARP, cleaved PARP (c-PARP), cleaved caspase 3, cleaved caspase 9, cleaved caspase 7, cleaved caspase 8, Noxa, Bak, Bax, Bik, Bim, Bad, Puma, Bcl2, Bcl-xl, Mcl-1, XIAP, BID, TRAIL, DR4, DR5, CHOP, ATF4, eIF2α, and p-eIF2α were from Cell Signaling Technology (USA). Cyclin E, CDK2, CDK4, CDK6, Fas, DR3, c-Myc, and p53 were from Santa Cruz Biotechnology (USA). TNFR1 and TNFR2 were from Proteintech (USA). β-Actin was from HuaBio (China).
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4

Protein Expression Analysis of Apoptosis Signaling

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Cells after treated with HCS were harvested and lysed with lysis buffer (50 mM Tris (pH7.4), 50 mM NaCl, 1 mM EDTA, 1% Triton X-100, and 10% glycerol). All solutions contains protease inhibitor cocktail (Sigma) and mixture of phosphatase inhibitors (10 mM NaF, 1 mM sodium pyrophosphate, 1 mM sodium orthovanadate, and 0.1 mM β- glycerophosphate), and the protein extraction was processed according to the manufacturer's instructions. Protein concentration was measured using a BCA Protein Assay Kit (Beyotime, Wuhan, China) according to the manufacturer's instructions. For Western blot analysis, an equal amounts of 50 μg protein were subjected to electrophoresis on SDS-polyacrylamide gels and transferred onto polyvinylidene fluoride (PVDF) transfer membranes by western blotting. Blots were probed with the following antibodies Bax, Bcl-2, XIAP, cleaved Caspase-3,-8,-9, cleaved PARP, p65, p-p65, iκB-α (Cell Signaling Technology, USA), Fas, Fasl, (epitomics,USA) and TNFR1 (Proteintech group,USA ) overnight at 4°C. Then followed by secondary antibody-conjugated horseradish peroxidase (HRP) and detected by ECL solution .
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5

Protein Expression Analysis of Apoptosis Markers

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Cells were lysed in a mixed buffer that contained RIPA, NaF, and PMSF. Protein concentrations were analyzed using a BCA protein assay kit (Tiangen Biotech Co., Ltd., Beijing, China). Protein was resolved by 10% SDS-PAGE and transferred to PVDF membranes (Millipore, Bedford, MA, USA). Membranes were incubated overnight with the indicated primary antibodies at 4 °C and then incubated with appropriate secondary antibodies for 2 h at room temperature. Protein bands were detected by ImageQuant LAS4000 (General Electric Company, Boston, MA, USA) and quantified by ImageJ software. GAPDH was detected as a loading control. Primary antibodies used in the study were listed as the following: TNFR1 (Proteintech, Cat No. 60192-1-AP), BAD (Proteintech, Cat No. 10435-1-AP), FAS (Proteintech, Cat No. 13098-1-AP), Cleaved Caspase3 (Proteintech, Cat No. 66470-2-Ig), and GAPDH (Proteintech, 60004-1-Ig).
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