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6 protocols using c myc antibody 9e10

1

Generation of AMPK Mutant Cell Lines

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pCDNA3 plasmid harbouring Myc-AMPKα1(WT), Myc-AMPKα1(S173C) or Myc-AMPKα1(S173D) [39 (link), 40 (link)], kindly given by Dr. Dietbert Neumann (Maastricht University, The Netherlands), were used to generate populations of C3A cells which stably express mutated forms of the AMPKα1(S173) residue. C3A cells were transfected by electroporation, as previously described [37 (link)]. After 24 h, the antibiotic Geneticin (500 μg/ml) (Invitrogen, Thermo Fisher Scientific) was added to the media in order to select the transfected cells. Clones expressing the AMPKα1 mutants were identified by immunodetection of c-Myc tag (c-Myc Antibody (9E10), Santa Cruz Biotechnology Inc.) and AMPKα (Cell Signaling Technology) protein expression, and grown in a medium containing Geneticin 200 μg/ml in conditions otherwise similar to parental cells.
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2

Immunofluorescence Imaging of Apoptotic Markers

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Cultured cells were grown on sterile glass cover slips and fixed with 3.7% paraformaldehyde at room temperature for 20 minutes. Cells were permeabilized by 0.1% saponin for 10 min and blocked with 10% donkey serum in PBS (Invitrogen, UK) for 20 minutes at room temperature. The cells were stained with the following primary antibodies: c-Myc Antibody (9E10) (Santa Cruz; 1:200), p53 (B-P3, Santa Cruz, 1:200), Caspase-3 Antibody (Cell Signaling; 1:400) or AlexaFluor 488 phalloidin (Life Technologies, 1:25). The corresponding secondary antibodies, AlexaFluor 488- and 555-conjugated donkey anti-mouse and anti-rabbit IgG (Invitrogen) were used at a concentration of 5 μg/mL, at room temperature for 1 hour. The cells were washed with PBS. Nucleic acid was stained with 0.5 μg/mL Hoechst stain (# 33342). The cover slips with cells were dropped onto a glass slide with mounting medium (Sigma-Aldrich, St. Louis, MO) and visualized with Zeiss Axioskop microscope (Carl Zeiss, Inc., Thornwood, NY). An ORCA-ER Digital Camera (Hamamatsu) was used for visualization and microphotography. The caspase-3 activity in detached cells was measured using using Image-iT Live green caspase detection kit (Life Technologies), as recommended by the manufacturer.
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3

Western Blotting for Protein Analysis

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Western blotting was performed as we described previously [26 (link)–29 (link)]. GAPDH was used to standardize cytosolic protein loading on the sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Mcl-1 antibody (S-19) (sc-819), c-Myc antibody (9E10) (sc-40), cyclin D1 antibody (H-295) (sc-753), VEGF antibody (147) (sc-507), LRP5 antibody (B-9) (sc-390267), frizzled-4 antibody (H-120) (sc-135108), p-GSK-3α/β antibody (6D3) (sc-81496), Wnt-5α/β antibody ( sc-376249), Bcl-xL antibody (H-5) ( sc-8392), TSPAN12 (sc-133810), β-catenin antibody (H-102) (sc-7199), Bax antibody (N-20): sc-493, p-Akt1/2/3 antibody (Ser 473)-R (sc-7985-R), GAPDH antibody (G-9) (sc-365062), and caspase-3 p11 antibody (C-6) (sc-271759) were purchased from Santa Cruz Biotech (Santa Cruz, Calif). The secondary antibodies were horseradish peroxidase-conjugated goat antimouse immunoglobulin (Ig) G (ICN Biomedicals, Aurora, Ohio) and horseradish peroxidase-conjugated goat antirabbit IgG (ICN Biomedicals).
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4

Quantifying Protein Interactions by Western Blot

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For Western blots, lysates were prepared and immunoblotting was performed as previously described (20 (link)). Co-immunoprecipitation was performed with rabbit polyclonal MYC antibody (c-MYC antibody (9E10), Santa Cruz Biotechnology) or mouse monoclonal HA antibody (16B12, Covance) using protein G agarose (Roche). Intensity of bands were quantified using the Image J software (National Institutes of Health, Bethesda, MD).
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5

Investigating Protein Expression Profiles

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Western blotting was performed as described previously 16 (link) using nuclear extracts or whole cell lysates. The following primary and secondary antibodies were used. The primary antibodies were mouse monoclonal c-MYC antibody (9E10; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), goat polyclonal ABCB5 antibody (46-620; ProSci Inc., Poway, CA, USA), goat polyclonal MRP5 antibody (Abcam, Cambridge, MA, USA), rabbit monoclonal BCRP/ABCG2 antibody (Abcam), rabbit monoclonal PCNA antibody (D3H8P XP; Cell Signaling, Danvers, MA, USA), mouse monoclonal PARP1 antibody (F-2; Santa Cruz Biotechnology, Inc.) and mouse monoclonal α-Tubulin antibody (B-7; Santa Cruz Biotechnology, Inc.). The secondary antibodies were antimouse immunoglobulins conjugated to horseradish peroxidase (Igs-HRP), anti-rabbit Igs-HRP and anti-goat Igs-HRP (Dako, Carpinteria, CA, USA).
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6

ChIP-qPCR and ChIP-seq on Plant Seedlings

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About 2 g of 10-day-old seedlings was harvested and cross-linked in 1% formaldehyde solution under a vacuum for 25 min. Cross-linking was stopped by adding 0.125 M glycine and vacuumed for 5 min. Cross-linked seedlings were rinsed in 10 mM Hepes buffer three times and dried with paper towels. Samples were ground into fine powder in liquid nitrogen. ChIP assays were performed following the Abcam ChIP protocol (https://abcam.com/protocols) with minor adjustments. Immunoprecipitations were performed by using c-Myc antibody (9E10, Santa Cruz Biotechnology) combined with protein G magnetic beads (Thermo Fisher Scientific). Input DNA and immunoprecipitated DNA samples were purified by PCR purification kits from Qiagen. Eluted DNA samples were used for either ChIP-qPCR or ChIP-seq.
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