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5 protocols using smad1 2 3

1

Proteomic Analysis of DPSCs

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DPSCs were lysed and assayed with a BCA protein assay kit (Beyotime). Samples containing 15–30 μg of protein were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis, and the proteins were then transferred to polyvinylidene fluoride membranes (Millipore). The membranes containing the transferred proteins were blocked with 5% bovine serum albumin and reacted with the primary antibody overnight at 4℃. The membranes were then labeled with corresponding secondary antibody of horseradish peroxidase (HRP)-conjugated anti-mouse IgG or anti-rabbit IgG for 1 h at room temperature before visualization with SuperSignal enhanced chemiluminescence substrate (Thermo Fisher Scientific, Waltham, MA, US). Primary and secondary antibodies against the following proteins were used in this study: METTL3 (96391, 1:1000); METTL14 (51104, 1:1000); WTAP (56501, 1:1000); p-Smad1/5 (9516, 1:1000) were purchased from Cell Signaling Technology (CST, Danvers, MA, USA). NOG (sc-293439, 1:1000); RUNX Family Transcription Factor 2 (RUNX2, sc-390351, 1:1000); Dentin Sialophosphoprotein (DSPP, sc-73632, 1:1000); Smad1/2/3 (sc-7960, 1:1000); p-Smad3 (sc-517575, 1:1000) were obtained from Santa Cruz Biotechnology. GAPDH (60004-1-Ig, 1:3000); goat anti-mouse IgG (SA00001-1, 1:3000) and goat anti-rabbit (SA00001-2, 1:3000) were purchased from ProteinTech Group (ProteinTech, Wuhan, China).
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2

TGF-β Signaling Pathway Modulation

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TGF-β (R&D systems, Minneapolis, MN) was reconstituted in 4mM HCl with 1 mg/ml bovine serum albumin to make a 4 μg/ml stock. Kinase inhibitors AG1478 and wortmannin were purchased from Sigma (St. Louis, MO). SP600125 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA) and PD0325901 from Selleck Chemicals (Houston, TX). The following antibodies were purchased from the indicated vendors: αSMA, β-actin from Sigma (St. Louis, MO), type I collagen from Southern Biotech (Birmingham, AL), E-Cadherin from BD Biosciences (San Jose, CA), phospho-EGFR (Y1172) and EGFR from Abgent (San Diego, CA), Smad3, phosphor-Smad3 (S423/425), phospho-Smad2 (S465/467) (Ser245/250/255), AKT, phospho-AKT(S473), phospho-p44/42 (T202/Y204), Histone H3 from Cell Signaling technology (Danvers, MA), ERK1, ERK2, phospho-c-Jun, c-Jun, Smad1/2/3, β-tubulin, TGIF, goat anti-mouse IgG-horseradish peroxidase (HRP), mouse anti-goat IgG-HRP antibodies from Santa Cruz Biotechnology (Santa Cruz, CA) and goat anti-rabbit IgG-HRP from Promega (Madison, WI).
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3

Quantitative Western Blot Analysis

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At the end of the incubation periods, cultures were harvested, and equal amounts (5–15 μg) of whole cell lysates were subjected to electrophoresis in tris–glycine 4–15% gradient gels [28 (link)]. Membranes were incubated with the following primary antibodies: Type I collagen (1:400, Southern Biotechnology, Birmingham, AL), phospho-Smad2, phospho-FAKS732, phospho-histone H1, phospho-CDK5 (1:1000, Cell Signaling Technology, Danvers, MA), total CDK5, Smad1/2/3, p35 (1:200, Santa Cruz Biotechnology, Santa Cruz, CA), and GAPDH (1:3000, Invitrogen), followed by appropriate secondary antibodies. Antigen–antibody complexes were visualized by chemiluminescence (Pierce Biotechnology, Rockford, IL). ImageJ software (http://rsb.info.nih.gov/ij/) was used to measure band intensities.
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4

Western Blot Analysis of Fibroblast Cultures

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Fibroblast cultures were harvested at the end of the incubation, and equal amounts of whole cell lysates were subjected to Western analysis, or were first immunoprecipitated with the indicated antibodies followed by Western analysis [4 (link)]. After electrophoresis proteins were then transferred to polyvinylidene difluoride (PVDF) membranes, blocked with 10% fat-free milk in TBST buffer (20 mM Tris HCl, 137 mM NaCl, and 0.05% Tween 20), and incubated with the following primary antibodies: Nrf2, Keap1, Smad1/2/3 (each at 1:200, Santa Cruz Biotechnology, Santa Cruz, CA), p300, histone H4 (1:1000, Millipore), GAPDH (1:3000, Invitrogen), α-SMA (1:2000; Sigma) or Type I collagen (1:400; Southern Biotechnology, Birmingham, AL). Antigen–antibody complexes were visualized by chemiluminescence (Pierce Biotechnology, Rockford, IL), and band intensities were quantified using ImageJ software (http://rsb.info.nih.gov/ij/).
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5

SMAR1 Expression and Signaling Pathway

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Gene expression was examined using a thermocycler (Eppendorf, Hauppauge, New York, NY, USA) with an iQ SYBR Green Real-Time PCR kit (Bio-Rad Laboratories Inc.). Data were normalized to expression of GAPDH (reference gene). Transcripts of SMAR1 forward: 5′-GCATTGAGGCCAAGCTGCAAGCTC-3′, reverse: 5′-CGGAGTTCAGGGTGATGAGTGTGAC-3′, GAPDH forward: 5′-AATTCAACGGCACAGTCAAAGCCGAGAATG-3′, reverse: 5′-GCGGCACGTCAGATCCACGCAGGAC-3′ were amplified by PCR. For immunoblot analysis, 50 µg of protein from whole T cell lysates was resolved by sodium dodecyl sulfate–polyacrylamide gel electrophoresis. After transferring the proteins to polyvinyl difluoride membrane it was probed using SMAD1/2/3, pSTAT3 (Santa Cruz Biotechnology Inc.), SMAR1 (Bethyl Laboratories), and β-actin (Santa Cruz Biotechnology Inc.) antibodies using a standard protocol.
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