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3 protocols using cd45ro uchl1

1

Comprehensive Immune Profiling of TILs

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TILs were stained using Live/Dead Fixable Aqua Dead Cell Stain Kit (Life Technologies) according to the manufacturer’s instructions. Cells were stained with a combination of antibodies from BD Biosciences (unless indicated otherwise), including CD3 FITC (SK7), CD4 PerCP-Cy5.5 (RPT-T4), CD8 PB (RPT-T8), 41BB (4B4–1), PD-1 (EH12.2H7, BioLegend), CTLA-4 (BNI3), ICOS (ISA3, eBioscience), OX40 (ACT35), CD45RO (UCHL1, Biolegend), CD45RA (HI100, eBioscience), CD62L (DREG-56, eBioscience), CCR7 (G043H7, BioLegend), and Ki67 (B56). For all flow cytometry assays described, data were acquired using a Canto II cytometer (BD Biosciences) and analyzed using FlowJo software (Tree Star version 7.6.5).
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Comprehensive Immune Cell Profiling

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PBMCs were stained with CD197 (G034H7) at 37°C for 20’, followed by CD4 (RPA-T4), CD8 (RPA-T8), CD69 (FN50), CD95 (DX2), CD45RA (HI100), and CD45RO (UCHL1) for 30’ at 4°C (Biolegend, San Diego, CA). Murine cells were stained with CD4 (GK1.5), CD8a (53–5.8), CD25 (PC61), CD44 (IM7), CD45 (30-F11), CD45.1 (A20), CD45.2 (104), CD62L (MEL-14), GITR (DTA-1), Sca-1 (D7), TCRβ (H57–597), TNF-ɑ (MP6-XT22) (all Biolegend) and live-dead (Life Technologies; Carlsbad, CA). Cells were fixed and permeabilized according to instructions (ThermoFisher). Human PBMCs were stained with IFN-ɣ (B27), Ki67 (Ki67), and TNF-ɑ (Mab11). Murine cells were stained with Bcl-2 (BCL-10C4) and TNF-ɑ (Mab11). Samples were acquired on an LSR-II (BD; San Diego, CA), and data were analyzed using FlowJo v10.3.1 (TreeStar; Ashland, OR).
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3

Murine Immune Cell Phenotyping

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Fluorochrome-conjugated antibodies specific for mouse CD4 (GK1.5), CD8a (53–6.7), CD5 (53–7.3, isotype: rat IgG2a, κ), IFN-γ (XMG1.2), CD45 (30-F11, isotype: rat IgG2b, κ), CD326 (EpCAM, G8.8, isotype: rat IgG2α, κ), I-Ab (AF6-120.1), CD11c (N418), and FoxP3 (MF-14), and human CD3 (HIT3a), CD8a (HIT8a), CD4 (OKT4), CD45RA (Hl100), CD45RO (UCHL1), and CD62L (DREG-56) were obtained from BioLegend. Mouse CD3ε (145-2C11), CD69 (H1.2F3, isotype: Armenian hamster IgG), Ly51 (6C3, isotype: rat IgG2a, κ), and HLA-DR (L243) specific antibodies were purchased from BD. The TCR Vβ repertoire kit (IOTest Beta Mark) was purchased from Beckman Coulter. UEA I lectin was obtained from GeneTex. Thymus, spleen, and LNs from 1–2-mo-old C57BL/6, ABabDII and ABabDR4 mice were isolated. Cells were obtained by mashing the organs through a 0.45-µm cell strainer. Isolation of thymic DCs and epithelial cells was performed as published (Xing and Hogquist, 2014 (link)). In brief, thymic lobes were digested in enzyme solution (RPMI-1640 medium with 0.05% Liberase TH and 100 U/ml of DNase I) at 37°C for 20 min. Single cells were then stained with antibodies specified in the respective figure legends and analyzed by flow cytometry (FACSCanto II; BD). FoxP3 staining was performed with True-Nuclear transcription factor buffer set from BioLegend.
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