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7 protocols using fluorsavetm

1

Immunocytochemistry of Cultured Motoneurons

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For immunocytochemistry, cells cultured on 10-mm coverslips were washed once with pre-warmed PBS and subsequently fixed with 4 % PFA for 10 min at 37 °C. After fixation, the motoneurons were permeabilized with blocking buffer containing 0.1–0.3 % Triton X-100 and 10 % donkey serum in PBS for 30 min at room temperature. Primary antibodies were diluted in blocking buffer and incubated over night at 4 °C. Cells were then washed 5 times for 5 min each with washing buffer (0.1 % Triton X-100, 0.2 % Tween-20 in PBS) and incubated with secondary antibodies diluted in freshly prepared blocking buffer for 1 h at room temperature. Subsequently, the motoneurons were washed again twice for 5 min, followed by 10 min of DAPI (0.4 µg/ml) staining. After three additional washes, the coverslips were washed again once with ddH2O and mounted on glass slides using FluorSaveTM (Millipore).
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2

Immunohistochemical Analysis of Neuronal Markers

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As for DAB staining, mice were transcardially perfused with 4% PFA and postfixed for an additional 24 h. Following immersed into 4% agarose, brains were sectioned into 30 μm thick sagittal sections using the VT1000S vibratome (Leica Microsystems, Wetzlar, Germany). Tissue sections were incubated with 0.1% Triton/PBS and 1 M glycine, followed by blocking with 1% BSA in PBS for 45 min. The sections were then incubated with the primary antibody AT8 (1:100, Invitrogen, CA, USA) overnight. This was followed by washing with PBS and a second incubation for 2 h at room temperature with a second primary antibody against NeuN (1:400, Millipore, Arklow, Ireland), GFAP (1:400, Sigma-Aldrich, Arklow, Ireland), Iba-1 (1:400, Wako, Fuggerstrasse, Germany) or Zinc Transporter 3 (ZnT3; 1:200, Synaptic Systems GmbH, Goettingen, Germany). After washing in PBS, tissue was incubated with fluorescent secondary antibodies [AlexaFluor-488 or AlexaFluor-568 (BioSciences, Dublin, Ireland)] followed by a short incubation with DAPI. FluorSaveTM (Millipore, Arklow, Ireland) was used to cover the tissue, and confocal images were taken with a TCR 6500 microscope (Leica Microsystems, Wetzlar, Germany) equipped with four laser lines (405, 488, 561, and 653 nm) using a 40× immersion oil objective (NA 1.3; Leica Microsystems).
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3

Indirect Immunofluorescence of hADSCs

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Indirect immunofluorescence of hADSCs obtained from mechanically activated adipose tissue was performed as previously reported by us [39 (link)]. Briefly, 3.5 × 103 cells/cm2 were seeded onto glass slides, grown until 85% confluence, and then fixed with 4% paraformaldehyde. Saturation and permeabilization was performed with 4% BSA and 0.3% Triton X-100. Then, cells were incubated for 18 h at 4 °C with primary antibodies directed against Vimentin (Polyclonal, Santa Cruz, CA, USA), FABP4 (Polyclonal, Cell Signalling, Danvers, MA, USA), and Osteocalcin (Polyclonal, Abcam, Hongkong, China). Cells were washed with PBS and then probed for 45 min with secondary antibodies Alexa Fluor 488 or 543 (Invitrogen, Carlsbad, CA, USA). Nuclei were counterstained with DAPI (2 μg/mL in PBS, Roche, Basel, Switzerland), and glasses were mounted with FluorSaveTM (Millipore, Burlington, MA, USA). Immunofluorescence was analyzed by using a Leica SP2 confocal microscope with He/Kr and Ar lasers (Heidelberg, Germany), which was also used for image acquisition. In negative controls, primary antibodies were replaced with equivalent concentrations of unrelated IgG of the same subclass [39 (link)].
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4

Immunohistochemistry for Microglial Visualization

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Immunohistochemistry was carried out as in [40 (link)–42 (link)]. Briefly, for immunohistological processing, 30 μm-thick free-floating coronal sections for were made on a sliding microtome (Leica SM2000R) and stored in cryoprotectant (0.25 M phosphate buffer, 30%w/v sucrose, 5.38 M ethylene glycol) at -20°C. For immunohistochemistry, sections were washed in PBS three times for 10 min, then for 15 min in 50 mM glycine dissolved in PBS and then washed again in PBS three times for 10 min. After this, sections were incubated in PBS+ (10% donkey serum and 0.1% Triton X-100 in PBS) for 1 h. Sections were incubated overnight at 4°C in primary antibody diluted in PBS+ (anti-Iba1, 1:200, goat polyclonal, Abcam ab5076). Sections were washed three times in PBS, incubated with AlexaFluor-conjugated secondary antibody (Alexa Fluor 568, Life Technologies) diluted 1:500 in PBS+ for 1 h, washed again three times in PBS and counterstained with DAPI (MP Biomedicals, 10 μg/ml). Afterward, slices were washed in 0.1 M phosphate buffer and mounted onto a coverslip (mounting medium: FluorSaveTM, Millipore 345789).
Fluorescence images were acquired using a Leica DMIRB inverted microscope, with a 20x/0.50 NA air objective. Images were captured as 16-bit TIFF files using VolocityTM Software (Perkin-Elmer).
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5

Fluorescent Staining of Adherent Cells

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The cells were seeded in ibidiTM μ-Slides, cultivated o/n and treated for indicated time points. Afterwards they were permeabilized with Triton X-100 0.1% (v/v), blocked with BSA (Sigma Aldrich, Taufkirchen, Germany) 1% or 5% and stained with rhodamine-phalloidin (1:400, Life Technologies, Darmstadt, Germany) and Hoechst 33342 (5 µg/ml, Sigma Aldrich, Taufkirchen, Germany) diluted in BSA 1% and incubated for 1 h at RT or o/n at 4 °C. After two washing steps with PBS Ca2+/Mg2+ (pH 7.4) samples were mounted (FluorSaveTM, Merck, Darmstadt, Germany). Images were taken with a Leica TCS SP8 SMD (Leica Microsystem, Wetzlar, Germany) using a 40x oil immersion lense.
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6

Quantifying F-actin and G-actin in hCOs

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F-actin and G-actin measurement was performed as described.65 D28 hCOs were dissociated into single cells using the same method used for scRNA-seq. Harvested cells were resuspended in organoid maturation medium and passed through a 40 μm filter strainer to obtain single cells. Cells then seeded at a density of 0.05 million/well on 24-well size coverslips coated with hESC qualified Matrigel. After two days in culture, cells were fixed with 4% PFA for 15 min. Permeabilization and blocking of the samples are performed as mentioned in the section on immunofluorescence microscopy. After blocking, cells were stained with antibody Alexa Fluor™ 647 Phalloidin (F-actin, ThermoFisher Scientific, Cat#A22287), Deoxyribonuclease I, Alexa Fluor™ 488 Conjugate (G-actin, ThermoFisher Scientific, Cat# D12371) and DAPI (ThermoFisher Scientific, Cat#D1306) for 2 h at room temperature. Cells were then washed thrice in 1×PBS and mounted with FluorSaveTM (Merck, Cat#345789) for imaging (Nikon, Eclipse Ti2; Zeiss, Axio Observer Z1 and Nikon, Eclipse TE2000-E). The same exposure settings were used to acquire images from WT and FEZ1-null groups. Images were analyzed with ImageJ/Fiji with quantification details in the following section. At least three independent experiments were performed.
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7

In Vivo Quantification of Oxidative Stress in Ischemic Penumbra

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We utilized dihydroethidium (DHE), an ROS probe that can be delivered in vivo, to measure ROS accumulation in the ischemic penumbra. According to the protocol described in our previous study [35 (link)], a solution of 10 mg/kg DHE (Invitrogen) in 50 µL normal saline was injected via the jugular vein into mice (n = 3 per group) just before the reperfusion procedure. After 2 h following MCAO/R, the brain hemisphere was collected, immersed in 30% sucrose solution, embedded in an OCT compound, and frozen using dry ice. Ischemic-penumbra-bearing sections (50 µm thick) were obtained from each mouse using a cryostat microtome (HM430, Leica) set at −21 °C. Two sections were randomly selected from each mouse and counterstained with Hoechst33258 for 5 min at 24 °C, and then mounted with a mounting medium (FluorSaveTM, Merck-Millipore). The resulting DHE fluorescence was visualized using an LSM-700 laser scanning confocal microscope. The number of DHE-positive cells (red fluorescence) was averaged per group and expressed as a percentage of total cells (blue fluorescence), following image analysis.
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