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Imagej

Manufactured by Ibidi
Sourced in Germany

ImageJ is an open-source image processing software. It allows users to view, edit, analyze, and process digital images. ImageJ provides a wide range of tools for image manipulation, including measurement and analysis functions.

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7 protocols using imagej

1

Chemotaxis Assay for CD4+ T Cells

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The ability of activated CD4+ T cells to migrate toward CXCL11 was monitored by a chemotaxis assay using Transwell inserts (6.5 mm insert, 3 μm filter, Costar). 600 μl/well RPMI or CXCL11 (100 ng/ml, Recombinant Human CXCL11 (ITAC), carrier-free, Biolegend) was added to the lower chambers. Activated CD4+ T cells were resuspended in fresh medium (1 million/ml) and 100 μl was added to the upper chamber of the Transwell inserts, and incubated at 37°C for 3.5 hrs. To evaluate chemotaxis, cells in the bottom chamber were then analyzed by flow cytometry for 1 min to evaluate the number of cells present. Dunn chamber chemotaxis was performed with CD3/CD46-activated T cells allowed to migrate in a gradient of 0-100nM nM CXCL11. Cells were monitored in a temperature-controlled chamber for 30 min by time-lapse imaging using an inverted RMDIB microscope (Leica) equipped with an Orca camera (Hamamatsu) that was controlled by Micromanager image acquisition software (Fiji). The paths of individual cells were tracked using the manual tracking plug-in into ImageJ and tracks analyzed using the chemotaxis tool plug-in into ImageJ (Ibidi).
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2

Quantifying Directed Cell Migration

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Data were analyzed using the Chemotaxis and Migration Tool (Ibidi, Verona, WI) in ImageJ (NIH). Cells were individually tracked using the manual tracking plug-in. Cell trajectories were plotted, along with accumulated distance and motility. In addition, the Chemotactic index, CI, was used as the measure of directed cell migration, as defined in Eq. (2) (Kong et al., 2011 (link)):
CI=xd where x is distance toward gradient and d is total accumulated distance. Values approach 1 as cells move more directly toward the gradient, are negative for cells moving away from the gradient. CI approaches zero in the absence of a gradient.
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3

Evaluating Inflammatory Impact on WJ-MSC Migration

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The impact of inflammatory factors on WJ-MSC migration was analyzed with μSlide plates for chemotaxis evaluation (Ibidi, Gräfelfing, Germany).
For this purpose, 6 μL of WJ-MSC suspension (cell density—1.6 × 106 cells/mL) was injected into the central chamber and incubated for 3 h at 37 °C to allow the cells to adhere to the plate. Two types of medium were then added to the lateral chambers; i.e., control medium without platelet lysate (left side) and selected stimulants (right side) (Figure 2). As a positive control, DMEM with bFGF at 20 ng/mL (cell attractant) was used. Over a 24-h, cell activity was observed under an AxioObserver Z.1 microscope (Carl Zeiss, Oberkochen, Germany) in transmitted light. Cell locations were recorded every 10 min. During the experiment, 37 °C, 5% CO2 and 21% O2 conditions were maintained. The obtained image was analyzed qualitatively using the Zen 2.0 program (Zeiss, Oberkochen, Germany)), while quantitative analysis used ImageJ and Chemotaxis Migration Tools (Ibidi, Gräfelfing, Germany). The results are present as p-value Rayleigh test).
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4

Cell Migration Analysis Protocol

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Cell migration directionality and speed (Figures 6A and S6B) were analyzed by ImageJ and Chemotaxis and Migration Tool (www.ibidi.de). The data was pooled from 60 cells (three independent experiments) and presented as mean±SEM. The statistical significance was analyzed by Student’s t-test. *, p<0.1; **, p<0.05; ***, p<0.01.
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5

Neutrophil Migration Dynamics in ICU Patients

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Neutrophils from healthy donors and ICU patients were allowed to crawl on activated HUVEC monolayers to determine the effect of LA-1 on neutrophil migration dynamics. HUVEC monolayers were grown on delta T dishes coated with 40 μg/mL type I collagen and TNF-α-activated. Neutrophils were either given no treatment, 15 μM LA-1, or DMSO vehicle control. Cell interactions were allowed to adhere at 37 °C, and neutrophil migration dynamics were imaged. × 20 bright-field images were captured every 30 s for 20 min. Neutrophil migration paths were tracked using a manual tracking software which is an ImageJ plug-in available from ibidi. Videos were uploaded into ImageJ, and for a given cell, the centroid was identified. At periodic intervals, the x, y coordinates were recorded and processed by the plug-in to provide path length, distance, and speed.
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6

Neutrophil Chemotaxis Assay with Hla

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Bone marrow neutrophils were resuspended in an HBSS medium containing 2% fetal bovine serum, 20mM HEPES, 1mM CaCl2 and 0.5mM MgCl2 and seeded into the central channel (observation area) of Ibidi μ-Slides and incubated at 37°C in a humidified incubator for 30min to allow for cell adhesion. The two 60μL reservoirs connected by the central channel were filled with 65μL of the HBSS/HEPES/Ca/Mg medium and a chemokine gradient established by adding 30μL of 10 ng/mL C5a into the right reservoir with or without 3 or 6 μg/mL Hla. Neutrophil migration in the central channel was recorded by time-lapse brightfield microscopy (Zeiss AxioObserverZ.1 equipped with a Zeiss PLAN-ApoChromat 10× objective/Numerical aperture 0.45) every 30 s for 30min in a 37°C humidified chamber. In each chemotaxis experiment, ~30 motile cells (or 30 randomly selected tracks if few were motile) were tracked via Manual Tracking in ImageJ (NIH) and the migration tracks were analyzed by the Chemotaxis and Migration Tool (Ibidi).
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7

2D Chemotaxis Assay with μ-Slide Chambers

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For 2D chemotaxis assays “μ-Slide Chemotaxis”-chambers (Ibidi, Munich, Germany) were used. Chemotaxis assays were carried out according to the manufacturer's instructions. Cells that divided or died during the observation period were excluded from analysis. Images were taken every 5 min for an observation period of 20 h. ImageJ [44 (link)] was used for tracking of cells and Chemotaxis and Migration Tool (Ibidi, Munich, Germany) was used for evaluating tracked cell data.
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