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10 protocols using obinutuzumab

1

Obinutuzumab and Prednisolone Assay Protocol

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Obinutuzumab was provided by F. Hoffmann-La Roche Ltd. (Basel, Switzerland). Prednisolone for in vitro assay was purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan). Prednisolone for in vivo assay was purchased from Shionogi & Co., Ltd. (Osaka, Japan). Bendamustine HCl was purchased from Selleck Chemicals (Houston, TX, USA).
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2

Antibody and Inhibitor Characterization

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Obinutuzumab was a kind gift from Roche Glycart. Rituximab and alemtuzumab were obtained from the hospital pharmacy. Antibodies were used at a concentration of 10 μg/ml that is known to elicit maximal effects. The PI3K inhibitors idelalisib, duvelisib (IPI-145), and copanlisib (BAY 80-6946) as well as the irreversible BTK inhibitors ibrutinib, acalabrutinib (ACP-196), and tirabrutinib (ONO/GS-4059) were purchased from Selleck via AbSource (Munich, Germany) and used as stock solutions prepared in DMSO. The DMSO concentration in cell culture media was limited to 0.5%.
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3

Karpas-1106P Cell Culture Protocol

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PMBL Karpas-1106P cells (DSMZ, Germany) were cultured in RPMI 1640 with 20% FBS [24 (link)]. Obinutuzumab was generously provided by Hoffman LaRoche (Basel, Switzerland). Antibodies specific for phospho-protein kinase B, phospho-IκBα, phosphor-Stat6, AKT, IκBα and Stat6, were purchased from Cell Signaling Technology (Cambridge, MA & Santa Cruz, CA, USA).
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4

Multicolor Flow Cytometry for Immune Cell Subset Analysis

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A FC500 and a Navios flow cytometer (both Beckman Coulter, Brea, USA) were used for multicolor immunofluorescence and functional tests.
Cells were stained in appropriate combinations according to use with following antibodies: anti-T-cell receptor (TCR) γδ-FITC [clone IMMU510], anti-CD3-r-Phycoerythrin-Texas Red (ECD) [clone UCHT1], anti-CD56-phycoerythrin-cyanine 5 (PC5) [clone N901], anti-CD27-phycoerythrin-cyanine 5 (PC5) [clone 1A4CD27], anti-CD56-phycoerythrin-cyanine 7 (PC7) [clone N901] (all Beckman Coulter, Brea, USA); anti-T-cell receptor (TCR) γδ-FITC [clone 11F2], anti-CD107a-PE [clone H4A3], anti-IFNγ−PE [clone 45-15], anti-CD45RA-PE [clone REA 562] (all Miltenyi Biotec, Bergisch Gladbach, Germany); and anti-perforin-PE [clone B-D48] (Biolegend, San Diego, USA).
As negative control, anti-IgG-PE [clone IS5-32F5] (Miltenyi Biotec, Bergisch Gladbach, Germany) was used.
γδ cells were defined as CD3+ TCR γδ+ MNC, NK cells as CD3- CD56+ MNC and αβ T cells as CD3+ TCR γδ- MNC.
For functional assay, the therapy grade monoclonal antibodies rituximab and obinutuzumab (both Roche, Grenzach-Wyhlen, Germany) as well as the IgG1-kappa control antibody (Sigma-Aldrich, St. Louis, USA) were used.
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5

PBMC Expansion and Functional Assays

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Freshly isolated PBMC from healthy donors were seeded in round-bottomed 96-well plates (50,000 cells/well) and cultured for 10 days in RPMI 1640 medium supplemented with 10% FCS, 1% l-glutamine, 1% penicillin/streptomycin, and 100 U/ml of human recombinant IL-2 (cat #: AF-200-02; Peprotech); after 2 days, irradiated Raji cells (3000 rad), incubated or not with an excess of rituximab, obinutuzumab, or wt-obinutuzumab (GA101-WT) (all from Roche) for 20 min at RT, were washed and added to the cultures (25,000 cells/well). Recombinant hIL-2-containing medium (100 IU/ml) was half-replaced every 2 days. At day 10, cells were harvested and used for phenotypic and functional analyses. For functional assays, 10 ng/ml of IL-15 (cat #: AF-200-15; Peprotech) was added at day 7.
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6

Evaluating Cell Death Pathways

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Cells were incubated with different concentrations of dexamethasone (Sigma-Aldrich), hydrogen peroxide (Industrias Noriega, Asturias, Spain), obinutuzumab (a gift from Roche), 6-Aminonicotinamide (6AN) (Vitro, Madrid, Spain) or under conditions of decreasing concentrations of glutamine (Thermo Fisher Scientific) for different time points. Cell death was determined by staining with PE-conjugated Annexin V and 7-amino actinomycin D (7AAD) (Immunostep, Salamanca, Spain) and analyzed by flow cytometry. The percentage of cell death, including early apoptosis, late apoptosis and necrosis (Annexin V PE positive/7ADD negative, Annexin V PE positive/7ADD positive and Annexin V PE negative/7ADD positive cells) was calculated after subtracting the percentage of spontaneous death of cells incubated with the vehicle from the total cell death using the following formula: % specific lysis = [(% lysis of target cell - % spontaneous cell death)/(100% – % spontaneous cell death)] × 100.
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7

Anti-CD20 Antibody Comparative Study

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The cell lines used in this study were Raji, Jurkat (both human) and the mouse cell line BW5147.
The following anti-CD20 antibodies were used: rituximab and obinutuzumab (Roche), ofatumumab (GSK) and rituximab isotypes (anti-hCD20 isotype collection, InvivoGen). Details of the antibodies used are included in the supplemental methods.
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8

Synthesis and Storage of Antibody Drugs

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Idelalisib was synthesized at Gilead Sciences, dissolved in DMSO at 10 mM, and stored at −20°C. Rituximab and obinutuzumab were provided by Hoffmann–La Roche (Basel, Switzerland). Palivizumab was used as a negative control and was produced at Gilead Sciences.
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9

Antibody-Mediated Cell Viability Assay

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Cells were incubated with a concentration range of CD20-mAbs Rituximab or Obinutuzumab (Roche) in the presence of 20% human serum (purchased from University Hospital Brno) in 96-well plates in triplicates for three days. To assess cell viability, CellTiter-Glo Luminescent Cell Viability Assay (Promega) was performed as recommended by the manufacturer and samples were measured with Tecan Spark 10M system. Acquired values were normalized against PBS-treated wells and plotted as relative viability.
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10

BAFF-Induced B Cell Activation Assay

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Recombinant human BAFF (rhBAFF) was from Immunotools (Friesoythe, Germany). BAFF mAb 1D6 was from eBioscience (San Diego, CA, USA). The anti-mouse PE-conjugate was from Dako (Glostrup, Denmark). Rituximab and Obinutuzumab were from Roche (Basel, Switzerland), Ofatumumab and Belimumab were from GlaxoSmithKline (Brentford, UK). All other antibodies were from BD Pharmingen (San Diego, CA, USA).
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