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5 protocols using bodipy ldl

1

Quantification of BODIPY-LDL Uptake in Cells

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Uptake of BODIPY-LDL (515ex/520em, ThermoFisher) by HeLa and ORP1L-null cells was quantified as described (Zhao and Ridgway, 2017 (link)). Briefly, cells were cultured on 35-mm Cellview dishes (Greiner Bio-One) with DMEM containing 5% LPDS for 16 h and then incubated on ice for 15 min with DMEM containing BODIPY-LDL (10 μg/ml) (Molecular Probes, ThermoFisher). Dishes were then mounted on the 37°C environmentally controlled stage of a Zeiss Cell Observer spinning disk confocal microscope equipped with an Axiocam Hrm CCD and a 63× (1.4 NA) oil immersion objective. Fluorescence intensity was quantified in Z-stack images collected over 0.24-μm intervals.
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2

LDL Uptake Assay in Hep 3B Cells

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Hep 3B cells were seeded at a density of 75,000 cells/24-well plate. The next day, modified conjugates (CTRL5, CTRL-p5, Gal-5, or Gal-p5) were added directly to each well, whereas unmodified siRNAs (scrambled, 5, or p5) were transfected using 1.5 μL RNAiMAX per condition. Media were replaced at 48 h with serum-free EMEM. The LDL uptake assay was performed according to the manufacturer’s instructions, using BODIPY-LDL at 2.5 μg/mL LDL per well (Molecular Probes, Invitrogen) the next day. Images were acquired with a Nikon ECLPSE TS100 fluorescence light microscope. Images were acquired using Nikon NIS Elements, and data were analyzed, using ImageJ, version 1.50i (Wayne Rasband; NIH, Bethesda, MD, USA). Lovastatin (Insolution Lovastatin, sodium salt; CalBiochem, Merck Millipore) at 1 μM was used as a positive control, with the medium replaced and fresh Lovastatin added each day. Heparin at 100 μg/mL was used as the negative control to prevent LDL uptake and was added 30 min prior to the assay (Thermo Fisher Scientific).
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3

Cellular Metabolic Assay Reagents

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Allicin, capsaicin, dimethyl sulfoxide (DMSO), 3-(4,5 dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and other chemicals were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Gibco fetal bovine serum (FBS) and BODIPY-LDL were purchased from Thermo Fisher Scientific, Inc. (Rockford, IL, USA).
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4

PCSK9 Inhibitor Effects on LDL Uptake

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HepG2 cells were seeded at 25,000 cells/96 well. Following overnight incubation, the medium was changed to DMEM without supplements for an additional 24 h. Cells were subsequently incubated with or without PCSK9 (100 nM) and with or without PCSK9 inhibitors 5E11 (0.1–1.0 µM), evolocumab (0.1–1.0 µM) and suramin (200 µg/ml) in serum-free medium for 4 h at 37 °C before addition of 5 µg/ml DiI-LDL (Thermo Fisher Scientific) or BODIPY-LDL (Thermo Fisher Scientific) for 4 h at 37 °C. Wells were washed with PBS and cellular uptake of fluorescence was evaluated using an EnSpire Alpha Plate Reader (Perkin Elmer) at excitation/emission 552/573 nm (DiI) or 515/520 nm (BODIPY). After overnight incubation of plates at −80 °C, the number of cells/well was quantified using the CyQuant Cell Proliferation Assay (Thermo Fisher Scientific), according to the manufacturer’s protocol.
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5

Quantifying LDL Uptake in HepG2 Cells

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HepG2 assay for measuring LDL uptake HepG2 cells were purchased from ATCC, authenticated by Short Tandem Repeat profiling and tested negative for mycoplasma. HepG2 cells were seeded at a density of 8,000 cells in 40 μL per well in black 384-well Greiner μClear plates in EMEM (ATCC) containing 10% Fetal Bovine Serum (Cytiva) and incubated for 24 hours at 37°C, 5% CO 2 . The next morning, cells were washed once with, and incubated in, EMEM containing 2% Human Lipoprotein Deficient Serum (Intracel, Sigma) for 24 hour at 37°C, 5% CO 2 . Cells were treated with antibody or peptide and PCSK9 mixture (40 μL, pre-incubated for 45 minutes at room temperature) for 1 hour at 37°C, 5% CO 2 . Following the incubation, 10 μL of Bodipy-LDL was added (Thermo Fisher) to the assay mixture and incubated for 2 hours at 37°C, 5% CO 2 . Twenty-five μL of 12% paraformaldehyde containing 1.5 μg/mL Hoechst 33342 was added to each well, and the cell plates were left at room temperature for 20 minutes. Medium was aspirated and cells washed twice with PBS, 50 μL PBS containing 0.03% sodium azide was added to each well and sealed. Cell plates were scanned, and images were obtained with an INCELL Analyzer. The compounds were evaluated in a minimum of 3 separate (11-point titration) experiments and n of 3 per concentration.
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