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Hematoxylin 1

Manufactured by Thermo Fisher Scientific
Sourced in United States

Hematoxylin is a chemical compound commonly used in histology and microscopy. It is a natural dye derived from the heartwood of the Logwood tree (Haematoxylum campechianum). Hematoxylin functions as a nuclear stain, selectively binding to the DNA and RNA in cell nuclei, allowing for the visualization of cellular structures under a microscope.

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13 protocols using hematoxylin 1

1

Periodic Acid-Schiff (PAS) Staining Protocol

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Fixed samples were triple rinsed with deionized water and then placed in 0.5% periodic acid solution (Thermo Scientific) for 5 minutes at room temperature. Samples were then rinsed with deionized water for 5 minutes before being submerged in Schiff Reagent (Thermo Scientific) for 15 minutes. Samples were rinsed with lukewarm tap water for 10 minutes. Samples were then counterstained with Hematoxylin I (Thermo Scientific) for 1 minute. Samples were rinsed with deionized water for 30 seconds and placed in 12 mM sodium bicarbonate for 1 minute. Samples were rinsed once with deionized water and then twice with 100% ethanol for 1 minute each. Samples were triple rinsed for one minute each with 120 mM hydrochloric acid in 70% ethanol before imaging.
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2

Oil Red O Staining of Fixed Samples

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Fixed samples were washed with tap water for 5 minutes. Samples were then rinsed with 60% isopropanol for 5 minutes. 30 mL Oil Red O Solution (0.5 g Oil Red O (Sigma) in 100 mL isopropanol) was mixed with 20 mL distilled water and filtered using a 0.24 µm vacuum filter to making a working solution. Samples were submerged in the working solution for 15 minutes and then rinsed with 60% isopropanol. Samples were counterstained with Hematoxylin I (Thermo Scientific) for 1 minute. Samples were rinsed with deionized water for 30 seconds and placed in 12 mM sodium bicarbonate for 1 minute. Samples were triple rinsed with DPBS before imaging.
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3

Paraffin-Embedded Spheroid Staining

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To visualize cell nuclei and cytoplasmic materials in spheroid samples (1:1 ratio of TC:SC), spheroids embedded in paraffin blocks were cut at a thickness of 3 µm. The stain solutions were prepared according to manufacturer's specifications. The reagents used were as follows: Hematoxylin I (Thermo Fisher Scientific), Clarifier I (Thermo Fisher Scientific), Bluing Reagent (Thermo Fisher Scientific), and Eosin-Y (Thermo Fisher Scientific).
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4

FFPE Tissue Immunohistochemistry Protocol

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Formalin fixed paraffin embedded (FFPE) tissue blocks were sectioned at 4 microns, and deparaffinized through three changes of xylenes and a decreasing series of ethanol. Antigen retrieval was performed in a steam cooker for 15 minutes in Declere (Cell Marque) working solution. Endogenous hydrogenase was blocked by incubation in 3% Hydrogen Peroxide for five minutes. Slides were incubated in Casein-based protein block (Biogenex) for 20 minutes before incubation with ARRDC3 antibody (Abcam) at room temperature for 30 minutes. Slides were then rinsed with buffer and incubated with Amplifier from Hi-Def Polymer Detection Kit (Cell Marque) for 10 minutes at room temperature. Afterwards slides were rinsed with buffer and incubated in DAB chromogen for six minutes at room temperature for color development. The slides were counterstained with Hematoxylin I (Richard Allan Scientific), rinsed in water, and dehydrated through a series of increasing ethanol and three changes of xylenes. Slides were then coverslipped. Digital images of slides were generated via Aperio AT scanner at 20×. Immunohistochemistry assays were performed on a Biogenex I6000 automated stainer. The apoptag apoptosis assay (Millipore, Cat No. 7100) and Masson's Trichrome (Polyscientific) staining were performed manually per the manufacturer's instructions.
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5

Fatty Acid and Adipocyte Differentiation

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Stearic acid (≥98.5%), oleic acid (≥99%), linoleic acid (≥99%), diatomaceous earth, insulin, dexamethasone, 3-isobutyl-1-methyl-xanthine, and fatty acid free bovine serum albumin (BSA) were obtained from the Sigma-Aldrich Chemical Co. (St. Louis, MO). Trypan blue was purchased from Eastman Kodak Company (Rochester, NY). Oil Red O was acquired from Rowley Biochemical (Rowley, MA) and Hematoxylin I was obtained from Richard-Allan Scientific (Kalamazoo, MI).
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6

Immunohistochemistry Staining of FFPE Tissues

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Formalin-fixed paraffin-embedded (FFPE) tissue blocks were sectioned at 4 μm, and deparaffinized through three washes in xylene and a decreasing series of ethanol. Antigen retrieval was performed in a steam cooker for 15 minutes in Declere (Cell Marque) working solution. Endogenous hydrogenase was blocked with 3% hydrogen peroxide for five minutes. Slides were incubated in casein-based protein block (Biogenex) for 20 minutes before incubation with the respective antibodies at room temperature for 30 minutes. Slides were then rinsed with buffer and incubated with Amplifier from Hi-Def Polymer Detection Kit (Cell Marque) for 10 minutes at room temperature. Afterwards slides were rinsed with buffer and incubated in DAB chromogen for six minutes at room temperature for color development. The slides were counterstained with Hematoxylin I (Richard Allan Scientific), rinsed in water, and dehydrated through a series of increasing ethanol and three changes of xylene. Slides were mounted on coverslips. Digital images of slides were generated via Aperio AT scanner at 20×. Immunohistochemistry assays were performed on a Biogenex i6000 automated stainer. Masson's Trichrome (Polyscientific) staining was performed manually as per the manufacturer's instructions.
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7

Tissue Clearing and Histological Staining

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After baking at 60°C, the tissue cleared and rehydrated, 5. Before staining with Hematoxylin 1 (Thermo, Cat#7221), followed by Clarifier, Bluing Reagent (Thermo, Cat# 7301) and finally Eosin-Y (Thermo, Cat# 7111).
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8

Tissue Clearing and Histological Staining

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After baking at 60°C, the tissue cleared and rehydrated, 5. Before staining with Hematoxylin 1 (Thermo, Cat#7221), followed by Clarifier, Bluing Reagent (Thermo, Cat# 7301) and finally Eosin-Y (Thermo, Cat# 7111).
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9

Immunohistochemical Detection of Malic Enzyme 1

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Formalin-fixed paraffin-embedded (FFPE) slides were deparaffinized after incubation at 65°C for one hour, rehydrated, and incubated in 3% hydrogen peroxide for 10 minutes. Slides were heated in antigen unmasking solution (Vector, Burlingame, CA). Primary antibody (1:100 malic enzyme 1, ab97445, Abcam, Cambridge, UK) was applied to each slide and incubated overnight at 4°C. Biotinylated secondary antibody (1:100 goat anti-rabbit, BA-10a00, Vector Laboratories Inc, Burlingame, CA) was applied and incubated at room temperature for 30–40 minutes. After washing, ABC complex (Vector Laboratories, Inc, Burlingame, CA) was applied and incubated for 30 minutes. DAB (Vector Laboratories, Inc, Burlingame, CA) was then applied and allowed to incubate 30–60 minutes. Slides were then immediately counterstained with hematoxylin 1 (ThermoFisher Scientific Inc, Kalamazoo, MI) and mounted. IRB approval for use of deidentified tissue samples was obtained from Washington University in St Louis.
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10

Immunohistochemical Staining of Malic Enzyme 1

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Formalin-fixed paraffin-embedded slides were deparaffinized after incubation at 65°C for 1 hour, rehydrated, and incubated in 3% hydrogen peroxide for 10 minutes. Slides were heated in antigen unmasking solution (Vector). Primary antibody (1:100 malic enzyme 1, ab97445, Abcam) was applied to each slide and incubated overnight at 4°C. Biotinylated secondary antibody (1:100 goat anti-rabbit, BA-10a00, Vector Laboratories, Inc) was applied and incubated at room temperature for 30 to 40 minutes. After washing, ABC complex (Vector Laboratories, Inc) was applied and incubated for 30 minutes. DAB (Vector Laboratories, Inc) was then applied and allowed to incubate 30 to 60 minutes. Slides were then immediately counterstained with hematoxylin 1 (Thermo Fisher Scientific Inc) and mounted. IRB approval for the use of deidentified tissue samples was obtained from Washington University in St Louis.
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