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Click it tunel alexa fluor 594 imaging assay

Manufactured by Thermo Fisher Scientific
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The Click-iT TUNEL Alexa Fluor 594 Imaging Assay is a fluorescent labeling kit designed for the detection and visualization of DNA fragmentation, a hallmark of apoptosis or programmed cell death. The kit utilizes a terminal deoxynucleotidyl transferase (TdT) enzyme to incorporate a modified nucleotide, which is then detected using an Alexa Fluor 594 dye. This allows for the identification and quantification of apoptotic cells through fluorescence microscopy or flow cytometry.

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16 protocols using click it tunel alexa fluor 594 imaging assay

1

Quantifying Apoptosis in GFP-Tumor Cells

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1.5 × 103 GFP-expressing tumor cells were added onto the endothelial monolayer and cultured overnight. Cells were then fixed for 15 min in 4% PFA at room temperature. Apoptotic cells were detected using the Click-iT TUNEL Alexa Fluor 594 Imaging Assay (C10246; Invitrogen) following the manufacturer’s instructions.
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2

Insulin-positive beta-cell apoptosis assay

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Purified islets were washed twice with KRB 5.6 mmol/L glucose and 3% BSA, fixed with 4% paraformaldehyde for 4 min in 0.1 mol/L PBS, washed with PBS and permeabilized with 0.02% Triton X-100 overnight. The primary antibody was an anti-insulin mouse monoclonal antibody (1:200 dilution; Sigma-Aldrich, St. Louis, MO, USA). The primary antibody localization was detected using anti-mouse TRITC (1:300 dilution; Sigma-Aldrich, St. Louis, MO, USA). Apoptosis was measured using a TUNEL staining in situ cell death kit (click-it Tunel Alexa Fluor 594 Imaging Assay; Invitro gen, Madrid, Spain). Proper controls for the secondary antibodies revealed no nonspecific staining. Nuclei were counterstained with 300 nM DAPI (Sigma Aldrich, Madrid, Spain). Confocal fluorescence images were captured with a Leica TCS SP5 confocal microscope (Leica, Wetzlar, Germany) at 2-µm intervals in the z-dimension. Images were analyzed using the open source image processing package FIJI. The β-cell number per islet was quantified by counting the number of cell nuclei within the insulin immunoreactive area. The apoptosis results are expressed as the number of TUNEL-positive β-cells over the total number of cells.
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3

Apoptosis Evaluation via Immunofluorescence and TUNEL

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For immunofluorescence and TUNEL assay, 3 × 104 cells were plated in chambers slides (Millipores, USA), fixed in 4% paraformaldehyde for 10 min, and then permeabilized in 0.5% Triton X-100-phosphate buffered saline (PBS) for 15 min. Cell death was measured by using Click-it TUNEL Alexa Fluor® 594 Imaging Assay (Invitrogen, UK) according to manufacturer’s instructions followed by blocking with BSA 3% in PBS for 1 h. Incubation with E-cadherin primary antibody for 1 h was followed by incubation in Alexa-Fluor 488-conjugated secondary antibody solution for 1 h. To visualize nuclei, it was used 4',6-Diamidino-2-Phenylindole, Dihydrochloride (DAPI, LifeTech, UK).Finally, the mounting media used was ProLong Gold antifade reagent (LifeTech, USA). Epifluorescence images were taken in Olympus microscope.
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4

Apoptosis Assay of Endothelial Cells

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Confluent HPAEC monolayers grown on gelatin-coated coverslips were treated with IC diluted 1:1 with EBM-2 cell growth media for 0, 30, 60, or 120 min. Treatment media was gently removed, and cells were not washed before fixation with 4% paraformaldehyde to preserve any dead or lightly adherent cells. Cell apoptosis was assessed using the Click-iT TUNEL Alexa Fluor 594 Imaging Assay (C10246, Invitrogen, Carlsbad, CA, USA) according to manufacturer’s protocol. Coverslips were mounted on slides using Vectashield mounting media (Vector Laboratories, Lincolnshire, IL, USA), and the images were acquired using a Zeiss Axio Imager M2m confocal microscope (Carl Zeiss AG, Oberkochen, Germany). Images were compiled and edited using ImageJ. The Click-iT TUNEL assay detects the free 3′ ends of fragmented DNA, staining the nuclei of apoptotic cells. TUNEL-positive (red) nuclei and DAPI-stained nuclei were quantified and averaged.
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5

Apoptosis and Proliferation Assay

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Cells were plates on collagen-coated coverslips in 24 well plates, infected with viruses, and incubated for additional 5 days. To detect apoptotic cells, cells were fixed in 4% paraformaldehyde, permeabilized, and subjected to Click-iT® TUNEL Alexa Fluor 594 Imaging Assay according to the manufacturer’s instructions (Invitrogen). To detect proliferating cells, cells were treated with EdU for 30 min prior to fixing. EdU-positive cells were detected using the Click-iT EdU Alexa Fluor 594 Imaging Kit according to the manufacturer’s instructions (Invitrogen). Nuclei were counterstained with DAPI. Images were acquired in ix71 inverted epifluorescence microscope (Olympus, Tokyo, Japan) and, quantified using at least 5 randomly selected fields containing at least 100 cells using the Image J software.
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6

TUNEL Assay for DNA Fragmentation

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Cells were seeded on coverslips and cultured under indicated conditions. Following incubation, the cells were fixed using 4% paraformaldehyde in PBS followed by a permeabilization with 0.25% TritonX-100. Next, cells stained with a terminal-deoxynucleotidyl transferase-dUTP nick end-labeling (TUNEL) assay (Click-iT TUNEL Alexa Fluor 594 Imaging Assay; Invitrogen, Carlsbad, CA) to identify cells with fragmented DNA. Nuclei were counterstained with 4′,6- Diamidino-2-phenylindole (DAPI; Vector Laboratories, Burlingame, CA). Fluorescence signals were detected with a Zeizz Axiophot and results were recorded with an Axiocam HRm digital camera. For each slide 10 images (counting ∼1000 cells) were obtained from randomly selected fields and analyzed.
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7

Apoptosis Assessment by Multiple Assays

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Apoptosis was investigated by three different assays: Annexin V/7-AAD flow cytometry assay, terminal-deoxynucleotidyl transferase-dUTP nick end labeling (TUNEL) assay and western blot analysis of caspases expression and cleavage. To perform TUNEL assay, transfected cells were fixed using 4% paraformaldehyde and then permeabilized using 0.25% Triton X-100, according to manufacturer's instructions. Cells were stained with a TUNEL assay (Click-iT TUNEL Alexa Fluor 594 Imaging Assay, Invitrogen, 10246) to identify those with fragmented DNA. Nuclei were counterstained with Hoechst 33342 (Life Technologies, CA, USA). Image acquisition was done using EVOS FLOID (Life Technologies) equipped with a 20 × Nikon objective.
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8

TUNEL Assay for Apoptosis Imaging

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TUNEL was performed using Click-iT TUNEL Alexa Fluor 594 Imaging Assay for microscopy and HCS according to the manufacturer's instructions (Invitrogen).
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9

Quantifying Apoptosis via TUNEL Imaging

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Apoptotic cells were detected by an in situ cell death detection kit, with nuclei stained with Hoechst 33342 (Click-iT TUNEL Alexa Fluor 594 Imaging Assay, ThermoFisher) according to the manufacturer's instructions. The number of apoptotic cells in each group was calculated as the percentage of TUNEL positive cells in total cell population, per image (n=3-4; 500-2,000 cells per image). The number of TUNEL positive (apoptotic) cells was counted using the ImageJ software plugin “TUNEL Cell Counter” (http://imagej.net/RETINA_Analysis_Toolkit). Total cell population per image was obtained using the ITCN (“Image-based Tool for Counting Nuclei”) plugin for ImageJ (https://imagej.nih.gov/ij/plugins/itcn.html).
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10

Quantifying Apoptosis with TUNEL Assay

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Apoptosis was confirmed and quantified in tissue sections using the TUNEL assay. Tissue sections were stained with fluorescein-conjugated TUNEL (Click-iT™ TUNEL Alexa Fluor™ 594 Imaging Assay, Thermo Fisher Scientific, USA) according to the manufacturer's instructions [21 (link)]. The number of TUNEL-positive cells was counted in 30 sections per slide.
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