The largest database of trusted experimental protocols

Ripa buffer

Manufactured by Bioworld Technology
Sourced in United States, China

RIPA buffer is a detergent-based cell lysis and extraction buffer used in biochemistry and molecular biology applications. It is designed to solubilize proteins from cells and tissues while maintaining their biological activity and interactions. The buffer contains a combination of ionic and non-ionic detergents, as well as other components that help preserve protein structure and function.

Automatically generated - may contain errors

8 protocols using ripa buffer

1

Quantifying Aβ and sAPP-α in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Supernatants from cells or brain tissue were analyzed for the presence of Aβ40 and sAPP-α with a commercial human Aβ40 ELISA kit (Invitrogen, #KHB3481) following the manufacturer’s instructions or anti-rabbit APP antibody abcam, #ab15272. Human Aβ1 to Aβ40 (R&D Systems, #DAB140B) and Aβ1 to Aβ42 (R&D Systems, #DAB142) were quantified in mouse hippocampus tissue using commercially available ELISA kits per manufacturer’s instructions. Whole hippocampus tissue was homogenized from 60-wk-old female mice in RIPA buffer (Bioworld, #42020024–2) with protease inhibitors.
+ Open protocol
+ Expand
2

Protein Detection in HHGMCs by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was used to detect proteins in HHGMCs. Cells were lysed with RIPA buffer (BioWorld, Dublin, OH, USA) containing complete protease inhibitors (Roche, Mannheim, Germany) and phosphatase inhibitors (Roche), and the BCA protein assay kit (Pierce Biotechnology, Rockford, IL, USA) was used for protein quantification. The protein samples were subsequently electrophoresed on 10% and 15% SDS-PAGE gels and transferred onto PVDF membranes. The membranes were blocked with 5% w/v skim milk/Bovine Serum Albumin (BSA) in TBST (TBS, 0.1% Tween-20) at room temperature for 1 h and incubated overnight at 4°C with the following primary antibodies: anti-HAPLN1, anti-TβRI, anti-TβRII (Abcam, Cambridge, UK), anti-GAPDH, anti-MEK1 (Santa Cruz, Dallas, TX, USA), anti-c-Raf, anti-p-c-Raf, anti-ERK1/2, anti-p-ERK1/2, and anti-p-MEK1/2 (Cell Signaling, Denver, CO, USA). Following washing with TBST, the membranes were incubated with secondary antibody at room temperature for 1 h, washed with TBST and the resulting protein bands were visualized using ECL reagents (GE Healthcare, Buckinghamshire, UK) as a chemiluminescent substrate. The bands were analyzed and quantified using the computer software ImageJ (NIH, Bethesda, MD, USA).
+ Open protocol
+ Expand
3

Western Blot Protein Detection Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were homogenized by sonication in radioimmunoprecipitation assay (RIPA) buffer (Bioworld) containing protease inhibitor cocktail and PhosSTOP phosphatase inhibitor cocktail. The lysates were centrifuged at 10,000 × g at 4 °C for 10 min, and the supernatants were collected. Proteins in the lysates were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride membrane (Bio-Rad Laboratories, Hercules, CA, USA). The membranes were blocked for 1 h using Tris-buffered saline (TBS) containing 5 % BSA and 0.1% Tween-20, and then incubated with primary antibodies against target proteins in 5% BSA and 0.1% Tween-20 in TBS for 24 h at 4 °C. After three washes with 0.1% Tween-20 in TBS, the membranes were incubated with HRP-conjugated secondary antibodies in 5% BSA and 0.1% Tween-20 in TBS for 1 h at room temperature (RT). Proteins were detected using the chemical reaction of HRP with electrochemiluminescence (ECL) substrates (GenDEPOT, Katy, TX, USA).
+ Open protocol
+ Expand
4

Protein Expression Analysis in Porcine Granulosa Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Porcine GCs were cultured in 6-well plates. RIPA buffer containing 1% PMSF (Bioworld, Nanjing, Jiangsu, China) was added to lyse the cells after 72 h treatment. A BCA determination kit (Beyotime, Shanghai, China) was applied to measure protein concentrations. Briefly, the BCA working solution and protein sample were mixed and reacted at 37 °C, then the complex was measured by Multiskan Go (Thermo, Boston, MA, USA) at 562 nm wavelength. Proteins (final concentration of 1–2 μg/uL,10–20 μg/lane) were separated on 15% SDS-polyacrylamide gels and transferred to nitrocellulose membranes. The antibodies used in this study were polyclonal anti-SRSF1 (1:1000 dilution, 12929-2-AP, Proteintech Group, Rosemont, IL, USA), polyclonal anti-tubulin (1:1000 dilution, #6181S, Cell Signaling Technology, Boston, MA, USA), polyclonal anti-Cleaved Caspase-3 (C-CASP3) (1:1000 dilution, #9664S, Cell Signaling Technology, Boston, MA, USA), and the secondary antibody (1:2000 dilution, SA00E1–2, Proteintech Group, Rosemont, IL, USA). Protein levels were detected by an imaging system (Image LAS-4000, Bio-Rad, Hercules, CA, USA) with ECL Plus reagent (Promega, Madison, WI, USA) and analyzed using ImageJ. The results were normalized with Tubulin. Each experiment was performed three times.
+ Open protocol
+ Expand
5

p38 MAPK Activation Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals were collected at indicated age and frozen in liquid nitrogen. Animals were lysed in protease inhibitor cocktail (Abcam, #ab65621) and 3× phosphatase inhibitor (Thermo Scientific, #78420)-supplemented RIPA buffer (bioWORLD) with a micropestle in 1.5-ml Eppendorf tubes. Lysates were resolved on 4–15% precast polyacrylamide gels (Bio-Rad). Phospho-p38 MAPK (used with 1:1000 dilution) was purchased from Cell Signaling Technology (#4511S) and α-tubulin antibody (used with 1:5000 dilution) from Merck (T5168). Secondary antibodies Goat Anti-Rabbit IgG H&L (HRP) (ab97051) and Goat Anti-Mouse IgG H&L (HRP) (ab97023) (used with 1:10,000 dilution) were purchased from Abcam. SuperSignal™ West Pico PLUS Chemiluminescent Substrate (#34577, Thermo Fisher Scientific) was used for protein detection. Western blots were quantified by using Fiji (see Supplementary Table S6 for Western blot quantifications).
+ Open protocol
+ Expand
6

Quantitative Western Blot Analysis of Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
GCs were collected 48 h after transfection, and RIPA buffer (Bioworld, Nanjing, China) containing 1% PMSF (Bioworld, Nanjing, China) was added to lyse the cells. Protein concentration as determined by a BCA determination kit (Beyotime, Shanghai, China). Protein samples were separated by SDS-PAGE according to our previous description [33 (link)]. The antibodies used in this study were anti-tubulin (TUBB) (diluted 1:1000, #6181S, Cell Signaling Technology, Boston, MA, USA) and anti-Cleaved Caspase-3 (C-CASP3) (diluted 1:1000, #9664S, Cell Signaling Technology, Boston, MA, USA), and the secondary antibody (diluted 1:2000, SA00001-2, Proteintech Group, Rosemont, IL, USA). Protein levels were detected with an ECL Plus reagent (Promega, Madison, WI, USA) and analyzed using ImageJ software (v1.8.0). Each experiment was performed three times.
+ Open protocol
+ Expand
7

Western Blot Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twenty-four hours after treatments, cells were lysed with RIPA buffer (BioWorld, Dublin, OH, USA) containing phosphatase and protease inhibitor cocktails (Roche, Risch-Rotkreuz, Switzerland). The samples were adjusted to the same protein concentration (BCA protein assay kit, Pierce, Rockford, IL, USA) and denatured by boiling in Laemmli sample buffer with 5% β-mercaptoethanol. Then were subjected to electrophoresis separation in SDS-PAGE. Gels were transferred to a PVDF membrane using a Trans-Blot turbo transfer system (BioRad, Hercules, CA, USA) and membranes were blocked with 5% nonfat milk in Tris-buffered saline (TBS) with 0.1% Tween 20, for 2 h. After blocking, membranes were incubated overnight with specific primary antibodies and then with HRP-conjugated secondary antibodies (Supplementary Table 1) and developed by chemiluminiscence (ECL, Thermo Fisher Scientific Inc., Walthan MA USA) using a ChemiDoc system (BioRad, Hercules, CA, USA). Bands corresponding to the different proteins were quantified, digitalized and analyzed with Image Lab 2.0.1. software (BioRad, Hercules, CA, USA) and Adobe PhotoShop CS5 12.0 (Adobe Systems Inc., USA).
+ Open protocol
+ Expand
8

Protein Extraction, Quantification, and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein extractions were performed using the RIPA buffer (BioWorld, Ohio, USA) supplemented with protease and phosphatase inhibitors (Roche, Mannheim, Germany). Protein concentrations were determined using a BCA assay (Thermo Fisher Scientific, MA, USA). From each extract, 15 μg of protein was subjected to SDS-PAGE on an 8-12% gel and transferred onto a PVDF membrane (Bio-Rad, CA, USA). Membranes were blocked for 1 h using 5% skim milk or 5% bovine serum albumin (BSA) and incubated at 4°C overnight with the following primary antibodies: SM22α, α-SMA, SM-MHC (Abcam, Cambridge, UK); Calponin (Sigma, MO, USA); Cyclin D, p-PDGFRβ, PDGFRβ, p-FAK, FAK, p-STAT3, STAT3, p-ERK, ERK, JNK, p-JNK, p38, p-p38, AKT, p-AKT, p-NF-κB, NF-κB, Ras, c-Raf, p-c-Raf (Cell Signaling, MA, USA); MMP-9, GAPDH, Cyclin E, CDK2, CDK4, p53, p27Kip1, p21Cip1 (Santa Cruz, TX, USA). After washing three times with TBST (TBS with 0.1% Tween-20), membranes were incubated with anti-rabbit or anti-mouse secondary antibodies (Cell Signaling) for 1 h at room temperature. Bands were visualized with the ECL reagent (Gen-DEPOT, TX, USA). Quantitative analysis was performed with scanning densitometry using ImageJ (NIH, MD, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!