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4 protocols using glycerol

1

Fluorescent Mycobacterium tuberculosis Strains

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Recombinant strains of Mtb H37Rv expressing an enhanced green fluorescent protein (GFP) or a red fluorescent protein DsRed [49 (link)] were cultured in Middlebrook 7H9 medium (Difco) supplemented with 10% oleic acid-albumin-dextrose-catalase (OADC, Difco), 0.2% glycerol (Euromedex), 0.05% Tween 80 (Sigma-Aldrich) and 50 μg/ml hygromycin (ThermoFisher Scientific) or 25 μg/ml kanamycin (Sigma-Aldrich) for H37Rv-GFP or H37Rv-DsRed, respectively. Cultures were maintained for 14 days until the exponential phase was reached. Before cell infection, bacilli were washed with Dulbecco’s Phosphate Buffered Saline (DPBS, free from MgCl2 and CaCl2, Gibco), resuspended in 10 mL RPMI-FBS and centrifuged at 1000 RPM for 2 min at room temperature to remove bacterial aggregates. Bacterial titer of the suspension was determined by measuring the optical density (OD600 nm) and GFP or DsRed fluorescence on a Victor Multilabel Counter (Perkin Elmer). The bacterial suspension was diluted at the required titre in RPMI 1640 supplemented with 10% FBS prior to infection. For in vivo studies, the non-fluorescent Mtb H37Rv strain were grown in Middlebrook 7H9 medium, as described previously [50 (link),51 (link)].
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2

Clickable Glycoconjugate Synthesis Protocol

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Bacto-tryptone and yeast extract were obtained from Biokar Diagnostics (FR). LB medium was purchased from Sigma-Aldrich (FR). Ampicillin was purchased from Eurobio (FR). Glycerol and isopropyl β-D-thiogalactopyranoside (IPTG) were purchased from Euromedex (FR).
Glycidyl propargyl ether was obtained from Sigma-Aldrich (Saint-Quentin-Fallavier, FR).
Glacial acetic acid, Trizma® and Hexafluoroisopropanol (HFIP) were obtained from Sigma-Aldrich (FR). Deionized water (18 MΩ-cm) was obtained by using a Millipore Milli-Q Biocel A10 purification unit. Cuprisorb was purchased from Seachem. Ethanol (96.0%, EtOH), mEthanol (98.5%, MeOH) and acetonitrile (99.9%, ACN) were obtained from VWR international. NaCl (99%) was purchased from Alfa Aesar (FR). Azide monosaccharides (β-Dgalactopyranosyl azide, Gal-N 3 ; and β-D-glucopyranosyl azide (Glu-N 3 ) were obtained from Carbosynth (UK). Ammonium Acetate and Ammonium pyrrolidinedithiocarbamate, APDC, were purchased from Fisher Scientific (FR). RCA 120 and RCA 120 -Fluorescein were purchased from Eurobio (FR). Human serum from human male AB plasma, USA origin, sterile-filtered, was used as received from Sigma-Aldrich (FR). N,N,N′,N′′,N′′-pentamethyldiethylenetriamine (PMDETA) was purchased from Sigma-Aldrich (FR). CuSO 4 •5H 2 O was obtained from VWR (FR). Sodium ascorbate was obtained from Fisher Scientific (FR).
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3

Recombinant Protein Expression in E. coli

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LB medium was purchased from Sigma-Aldrich (FR). Bacto-tryptone, and yeast extract were purchased from Biokar Diagnostics (FR). Ampicillin was obtained from Eurobio (FR). Glycerol and isopropyl β-D-thiogalactopyranoside (IPTG) were purchased from Euromedex (FR).
Complete mini EDTA-free protease inhibitors were purchased from Roche Diagnostics (D).
Bis(trifluoromethane)sulfonamide lithium salt was purchased from TCI Europe (BEL). Sodium
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4

Reagents for Bacterial Culture Experiments

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Materials. LB medium was purchased from Sigma-Aldrich (Saint-Quentin-Fallavier, FR). Bacto-tryptone, and yeast extract were purchased from Biokar Diagnostics (Allone, FR). Ampicillin was obtained from Eurobio (Courtaboeuf, FR). Glycerol and isopropyl β-D-thiogalactopyranoside (IPTG) were purchased from Euromedex (Souffelweyersheim, FR). Complete mini EDTA-free protease inhibitors were purchased from Roche Diagnostics (Mannheim, D). Hydrogen peroxide and formic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). Glacial acetic acid was obtained from Fisher Scientific (USA). Deionized water (18 MΩ•cm) was obtained by passing in-house deionized water through a Millipore Milli-Q Biocel A10 purification unit.
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