PvDBP Region II and monoclonal antibodies were purified as described [29 (
link)] and buffer exchanged into PBS. Stock antigen and antibodies solutions in PBS buffer were exchanged into 200 mM ammonium acetate solution (pH = 6.5–7). Before each experiment, the antigen and antibody were mixed and diluted to 5 μM and 6 μM, respectively. The sample solution was incubated at 25 ºC for 30 min before MS analysis.
Samples were analyzed using a quadrupole ion-mobility time-of-flight mass spectrometer (
Synapt G2 HDMS, Waters, Milford, MA). Protein and complex ions were generated in a nESI source in the positive-ion mode. The source parameters were optimized to provide gentle ESI conditions. The traveling-wave IM separator was operated at a N
2 pressure of ~1.5 mbar; the IMS wave velocity was 650 m/s; and the IMS wave height 40 V. The ToF-MS was operated over a
m/z range of 100–15,000. For a CIU experiment, the trap-collision voltage applied to the ions in the traveling-wave-based ion trap situated prior to the IM separator was increased from 10 to 200 V in 10 V increments, and ion-mobility mass spectra were acquired at each increment.
Mass spectra were processed with
Masslynx V4.1 software (Waters). Arrival time distributions at each collision voltage were extracted in the
Drift Scope (Waters) and plotted as a 2D contour plot using
Origin 2015 (OriginLab, Northampton, MA).
Huang Y., Salinas N.D., Chen E., Tolia N.H, & Gross M.L. (2017). Native Mass Spectrometry, Ion mobility, and Collision-Induced Unfolding Categorize Malaria Antigen/Antibody Binding. Journal of the American Society for Mass Spectrometry, 28(11), 2515-2518.