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16 protocols using wz4002

1

Evaluating EGFR Inhibitor Efficacy Under Hypoxia

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Cell survival was assayed by clonogenic assays, cell proliferation assays, or monolayer growth. For clonogenic assays, after the H1975 cells were exposed to normoxia or hypoxia for 4 weeks, cells were seeded at 500/well in 6-well plates and treated with AZD9291 or WZ4002 (Selleckchem) at the indicated concentrations. Colonies were washed with 0.9% saline solution and stained with crystal violet 10–14 days later. Colonies consisting of >50 cells were counted. Colony formation was normalized to plating efficiency of the untreated cells. Errors bars in the survival analysis are based on three independent experiments. For cell proliferation assay, after the H1975 cells were exposed to normoxia or hypoxia for 4 weeks, 1X105 cells were seeded in 100 mm dish and treated with AZD9291 or WZ4002 (Selleckchem) at 1 μM. Cell growth inhibition by AZD9291 and WZ4002 in H1975 N and H1975 H cells were measured by serial cell counts after 3, 6 and 9 days treatment. To quantify survival by monolayer growth, cells were seeded at a defined density in 6-well plates and treated with AZD9291 at the indicated concentrations for 5 days. Cells were stained with crystal violet for monolayer visualization and then the stain was dissolved in 70% ethanol and quantified by plate reader.
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2

Inhibitor Formulation and Preparation

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The JAK1/2 inhibitor AZD1480 was provided by AstraZeneca. The type II JAK2 inhibitor BBT594 was provided by Novartis. INCB18424 and EGFR TKI erlotinib were purchased from Chemietek. Pan-JAKi P6 was purchased from Calbiochem. The EGFR T790M–specific inhibitor WZ4002 was purchased from Selleck Chemicals. For in vitro experiments, the inhibitors were dissolved in 100% dimethyl sulfoxide (DMSO) to prepare a 10 mM stock and stored at −20°C. For in vivo experiments, the indicated inhibitors were formulated daily in purified, sterile water supplemented with 0.5% methyl cellulose and 0.1% Tween 80.
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3

Characterization of NSCLC Cell Lines and Drug Resistance

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The human NSCLC cell lines (HCC827 and H1975) and NIH 3T3 (mouse embryonic fibroblast cell line) were obtained from the American Type Culture Collection (Rockville, MD). PC-9 cells were a gift from F. Koizumi and K. Nishio (National Cancer Center Hospital, Tokyo, Japan). PC-9/GR (gefitinib-resistant cell line) and PC-9/ER (erlotinib-resistant cell line) cells were established as part of a previous study (33 (link)). Cells were cultured in RPMI 1640 medium containing 10% FBS, 2 mmol/L L-glutamine, and 100 units/mL of penicillin and streptomycin, and maintained at 37 °C in a humidified chamber containing 5% CO2. Osimertinib, CO-1686 and WZ4002 were purchased from Selleck Chemicals (Houston, TX). The cell lines used were authenticated by STR analysis and confirmed to be mycoplasma free using standard methods.
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4

EGFR-Mutant Lung Cancer Cell Culture

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The H1975 and HCC827 cell lines were obtained from the American Type Culture Collection (Rockville, MD, USA), and the PC-9 cell line was a kind gift from Dr. Kazuto Nishio (National Cancer Center Hospital, Tokyo, Japan). The cells were cultured in RPMI 1640 (Invitrogen, Carsbad, CA, USA) that contained 10% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 mg/mL streptomycin (Invitrogen) at 37 ℃ in an atmosphere with 5% CO2. Osimertinib, WZ4002, and THZ1 were purchased from Selleck Chemicals (Houston, TX). The 3-(4,5-dimethylthiazo-2-yl)-2,5-diphenyltetrazolium bromide (MTT) solution and TGF-β1 were purchased from Sigma (St. Louis, MO, USA) and R&D Systems (Minneapolis, MN, USA), respectively. QS1189 was kindly provided by Qrient Co., Ltd. (Seongnam, Korea).
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5

Western Blotting with Targeted Inhibitors

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For western blotting, the following antibodies were used: phospho-EGFR Y1068 (Abcam); EGFR, pERK1/2 T202/204, ERK1/2, p-AKT S473, BIM, Actin (Cell Signaling); AKT1/2/3 (Santa Cruz). For cell culture studies, gefitinib, WZ4002, NVP-AEW541, ABT-263 (all from Selleck), were dissolved in DMSO to a final concentration of 10 mmol/l and stored at −20°C. Unless otherwise specified, 1 μM concentration was used for in vitro cell culture experiments.
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6

Cell Line Validation and Drug Treatments

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All cell lines were grown in RPMI (GIBCO) with 10% FBS and were obtained from the
ATCC or the Massachusetts General Hospital Center for Molecular Therapeutics, which
performs routine cell line authentication testing by SNP and STR analysis. Erlotinib,
AZD6244, BEZ235, crizotonib, lapatinib, WZ4002 (Selleckchem, Houston, TX), and BIO
(Sigma, St. Louis, MO) were dissolved in DMSO.
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7

Molecular Inhibition of EGFR Signaling

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Osimertinib (Cat# S7297), WZ4002 (Cat# S1173), and gefitinib (Cat# S1025) were purchased from Selleck Chemicals. AICAR (Cat# 2840) was purchased from Tocris. H2O2 (Cat# H1009-100ML) was purchased from Sigma-Aldrich.
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8

Functional Analysis of Shp2, Gab1, and Erk2 in Cell Signaling

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On-target Smart pool Shp2-specific and non-silencing control siRNAs were from Dharmacon. Shp2 shRNAs were described [6 (link)]. Gab1FF, Shp2CSDA, and HA-Erk2 plasmids used in transfected experiments in cell cultures have been described [2 (link), 3 (link), 5 (link)]. Erlotinib was from LC Chemicals. WZ4002 was from Selleck. SPI-112Me was synthesized as described [11 (link)]. Antibodies to Shp2, Erk1/2, phospho-Erk1/2 (pErk1/2, T202/Y204), Gab1, Akt, c-Myc, and β-actin were obtained from Santa Cruz Biotechnology. Antibodies to Flag (rabbit), phospho-Gab1 (pGab1, Y627), phospho-Akt (pAkt, S473), and phospho-Src (pSrc, Y416) were from Cell Signaling Technology. Src antibody was from Calbiochem. The anti-Flag M2 monoclonal antibody was from Sigma.
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9

Investigating EGFR and FGF Signaling Pathways

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The following antibodies were used: phospho EGFR Y1068 (Abcam AB5644),
phospho EGFR Y1068 (Cell Signaling 3777), EGFR (Cell Signaling 2646), EGFR (Cell
Signaling 4267), phospho ERK1/2 T202/Y204 (Cell Signaling 9101), phospho ERK1/2,
T202/Y204 (Cell Signaling 4370), ERK1/2 (Cell Signaling 9102), phospho AKT S473
(Cell Signaling 4060), AKT1/2/3 (Santa Cruz sc-8312), BIM (Cell Signaling 2933),
Actin (Cell Signaling 4970), Actin-HRP conjugated (Cell Signaling 12262), FGFR1
(Cell Signaling 9740), and FGFR3 (Cell Signaling 4574), phospho FRS2α
Y436 (Cell Signaling 3861), E-Cadherin (Cell Signaling 3195), N-Cadherin (Cell
Signaling 13116), Zeb1 (Cell Signaling 3396), Vimentin (Cell Signaling 5741).
Gefitinib, WZ4002, AZD9291, and BGJ398 (all from Selleck) were dissolved in DMSO
to a final concentration of 10 mmol/liter and stored at −20 °C.
The 18 drugs tested in the long-term assay are listed in Supplemental Table 3.
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10

EGFR and FGFR Pathway Inhibition in NSCLC

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WZ4002 (#S1173) and AZD4547 (#S2801) were purchased from Selleck Chemicals. Human bronchial epithelial cell line BEAS-2B, human lung squamous cancer cell line H520, and human NSCLC cell lines H1975 and PC9 were procured from the Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences and tested for mycoplasma contamination by DAPI staining before experiment. All the cells were maintained in RPMI-1640 medium (#C11875500BT, Gibco) with 10% FBS (#10270-106, Gibco), 100 μg/ml streptomycin, and 100 U/ml penicillin (#15140122, Gibco) and placed in a humidified cell incubator (5% CO2, 37°C). Antibodies including anti-p-EGFR (#3777S), anti-p-FGFR1 (#2544S), anti-EGFR (#2646S), anti-FGFR (#9740S), anti-GAPDH (#5174S), and HRP-linked anti-rabbit IgG (#7074S) were purchased from Cell Signaling Technology (Danvers, MA, USA).
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