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710 inverted confocal microscope

Manufactured by Zeiss
Sourced in Germany

The Zeiss 710 inverted confocal microscope is a high-performance imaging system designed for advanced research applications. It features a fully automated optical path, precise control over illumination, and a sensitive detection system to capture detailed images of biological samples. The core function of this microscope is to provide researchers with a versatile tool for high-resolution, three-dimensional imaging and analysis of various specimens.

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21 protocols using 710 inverted confocal microscope

1

Thrombin-Mediated Hydrogel Degradation

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AzmCh and AzTMBmCh hydrogels were made using 22 μL of solution at a concentration of 0.01 mM AzmCh and AzTMBmCh pre-reacted overnight in the gel precursor solution. After gel formation, the gels were swollen overnight in wash buffer. The AzmCh and AzTMBmCh hydrogels were placed side by side in a confocal chamber slide (Nunc™ Lab-Tek™ II Chamber Slide, Glass, 1 well). Thrombin solution (200 μL of 120 unit/mL) was added to the top of the hydrogels every two hours to ensure a source of thrombin and that gels remained hydrated without disturbing the gels over the course of the experiment. Z-direction images of the gels were taken (Zeiss 710 inverted confocal microscope with Zen software), and tiles were stitched with 20% overlay every hour over a period of twelve hours. A final image was taken after six more hours of incubation (18 hours total) with thrombin solution. Densitometry analysis of AzmCh and AzTMBmCh gels to assess mCherry cleavage over time was performed using Plot Profile in ImageJ. This experiment was performed in triplicate.
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2

Transferrin Uptake Assay in SNpc

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The transferrin (Tf) uptake essay was modified from that previously described50 (link). Syt11-carrying lentivirus was unilaterally injected into the SNpc of TH-GFP mice (provided by Minmin Luo, National Institute of Biological Sciences, China). The SNpc-containing slices were placed on Millicell® CM (0.4 μm pore size; Millipore) culture plates and incubated with DMEM supplemented with 10% FBS at 37 °C in a humidified incubator (5% CO2). After 4-h incubation, the slices were serum-starved by replacing the medium with serum-free DMEM containing 20 mM HEPES and 1 mg ml−1 BSA for 45 min at 37 °C. They were then incubated with serum-free medium containing 25 μg ml−1 human Tf conjugated to Alexa Fluor 594 (Invitrogen) for 30 min at 37 °C. The unbound Tf was washed off with ice-cold PBS containing 0.3 mM CaCl2 and 0.3 mM MgCl2. The slices were subsequently fixed in an ice-cold solution of 4% formaldehyde and mounted on slides with 50% glycerol. A ×42 oil lens on a Zeiss 710 inverted confocal microscope was used to scan z-stack of 1-μm optical sections. Identical settings were applied to all samples in each experiment. The average fluorescence intensity of the Tf signal in GFP-positive cell bodies in the SNpc was calculated with ImageJ.
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3

Immunohistochemical Analysis of Dopaminergic Neurons

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Immunohistochemistry was performed as described previously with slight modifications32 (link)–34 (link). Briefly, mice were anesthetized and perfused with 0.9% saline followed by 4% paraformaldehyde in PBS, and the brain was removed and post-fixed overnight in 4% paraformaldehyde in PBS at 4 °C. After dehydration in 10, 20, and 30% sucrose, a series of coronal sections (40 μm thick) across the striatum and midbrain were cut on a Leica cryostat (every fourth section was used for counting dopaminergic neurons). The sections were permeabilized with 0.3% Triton X-100 in PBS containing 2% bovine serum albumin (BSA) for 5 min at room temperature. After blocking with 2% BSA in PBS, the samples were incubated with primary antibodies at 4 °C overnight. After three washes with blocking solution, samples were incubated for 1 h with secondary antibodies. The sections were subjected to TUNEL staining (Cat. No. 12 156 792 910; Roche) following the manufacturer’s protocols. Nuclei were visualized by DAPI staining and samples were mounted on slides with 50% glycerol. Fluorescence images were captured using a Zeiss 710 inverted confocal microscope. All paired images were captured at the same gain and offset settings and post-collection processing was applied uniformly to all paired images using ImageJ (National Institutes of Health, Bethesda, MD).
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4

3D Visualization of DNA Penetration

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After sample loading, the 10 mm 90ZB depth filter discs were sliced along the center using a MITER CUT precision cutting tool (Lexington, KY) to give two approximately equal three-dimensional arcs. The wet sliced faces of the half discs were placed on a glass slide, making sure there was a minimal gap between them, and visualized on a Zeiss 710 inverted confocal microscope (Oberkochen, Germany) using a Zeiss 10× EC Plan-Neofluar (0.3 NA) objective. The laser intensity, gain and pinhole were kept constant in visualizing the comparative sample sets to allow for direct and qualitative comparison. The depth probed along the z-axis (depth into the samples) was also kept similar (± 2 μm) to ensure that the densities of collapsed visualizations were comparable. Fixed-area thresholding was performed in Image J between a set of images, where direct comparisons of the extent of DNA penetration were made.
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5

Immunohistochemistry of Murine Pinnae

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Freshly recovered pinnae were fixed in PBS/4% PFA on ice for 30 min. Pinnae were then rinsed with cold PBS and transferred to PBS/15% sucrose for a further 1 h on ice. Fixed pinnae were then embedded in optimal cutting temperature (OCT) medium (Sakura Finetek, Netherlands), and frozen at −80 °C overnight. Frozen pinnae were equilibrated to −20 °C and then cut into 5 μm sections which were affixed to glass microscope slides at room temperature for at least 18 h. All subsequent processing was conducted at room temperature. Sections were simultaneously blocked and permeabilised in PBS/5% goat serum/0.05% saponin (Sigma, UK) for 30 min and then incubated with primary antibodies diluted in PBS/5% goat serum/0.05% saponin for 1 h. After three washes in PBS/0.05% saponin, sections were incubated with fluorophore-conjugated secondary antibodies for 45 min without light exposure (primary and secondary antibodies are listed in Supplementary Table S1). Finally, sections were washed three times in PBS/0.05% saponin, counter-stained with 2 μg/ml of DAPI (Life Technologies) for 5 min and washed two further times in distilled water. Slides were mounted in Prolong Gold AntiFade reagent (Life Technologies) overnight prior to analysis using a Zeiss 710 inverted confocal microscope. All grouped images were analysed using identical acquisition settings in Zeiss ZEN software.
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6

Immunofluorescence Staining of Cells

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Cells were evenly spread on glass slides and fixed with 4% paraformaldehyde (PFA) at 37°C for 20 min. The slides were washed three times at 37°C with PBS containing 0.5% Triton-100. The sample was further washed three times with 37°C PBS containing 3% BSA and 0.5% Triton-100 and blocked for 1 hr at room temperature. The slides were washed three times with PBS and incubated with primary antibody at 4°C overnight. Then, the cells on the slide were rinsed with the secondary antibody at room temperature for 1 hr in the dark. Nuclei were stained with DAPI at 37°C for 10 mins. The cells were observed under a Zeiss 710 inverted confocal microscope with a 40 ×1.3 NA oil lens. The excitation wavelength for DAPI was set at 405 nm. The excitation wavelength of red light was set at 543 nm. The excitation wavelength of green light was set at 488 nm.
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7

Confocal Imaging of Neural Circuits

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Samples were imaged as previously described (Takatoh et al., 2013 (link)) using a Zeiss 710 inverted confocal microscope at 20X resolution. High resolution bouton images (Figure 3G–H; Figure 5) were obtained as 100X z-stacks. Full-field views of axon collaterals entering central facial, digastric, and contralateral trigeminal nuclei were obtained using a Zeiss inverted epifluorescent microscope at 10X resolution.
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8

Immunofluorescence Staining of Frozen Tissue Sections

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LN were isolated, fixed in 4% PFA for 1 h at 22–25°C with gentle shaking, dehydrated by sucrose gradient (15% sucrose in PBS > 1h at 4°C, then 30% sucrose at 4°C overnight), embedded in OCT (Sakura), and snap-frozen in dry ice-cooled 2-methylbutane. 8- to 12-μm sections were cut and air-dried. All staining was performed at 22–25°C. Sections were permeabilized for 10–30 min with 0.5% Triton X-100 in PBS, then incubated for 10–30 min in block buffer consisting of 0.1% Triton X-100 in PBS with 4% normal rat serum, 4% normal mouse serum, and 10 μg/ml anti-CD16/32 (BioLegend, clone 93). Stains were done with antibodies diluted in the block buffer. Slides were mounted with Fluoromount-G (Southern Biotech) and visualized using a Zeiss 710 inverted confocal microscope with a 25 × or 40 × oil-immersion objective and ZEN 2010 software. Image analysis was done with ImageJ software v1.49 (NIH).
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9

Colocalization Analysis of Plant Proteins

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For co-localization analysis, the ORFs of MKB1, MASH, and Medtr3g062450, including and lacking their stop codon, were cloned in pDONR221 to obtain entry clones that were subsequently used to generate CaMV35S promoter-driven C-terminal and N-terminal GFP fusion constructs in pFAST-R05 and pFAST-R06 destination vectors, respectively, via single LR GatewayTM (Invitrogen) reactions (Shimada et al., 2010 (link)).
For agro-infiltration, wild-type tobacco (Nicotiana benthamiana) plants were grown for 3–4 weeks. Tobacco infiltration of lower epidermal leaf cells with the Agrobacterium tumefaciens strains was performed as described in Boruc et al. (2010) (link).
Image acquisition was obtained with a Zeiss 710 inverted confocal microscope, equipped with a 63× water-corrected objective (n.a. 1.2) using the following settings for EGFP and mCHERRY detection: EGFP excitation at 488 nm, emission filter 500–530 nm, mCHERRY excitation at 559 nm, and emission filter of 630–660 nm. Confocal images were acquired using the ZEN software package attached to the confocal system. Confocal images were processed with ImageJ1.
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10

Zebrafish Embryos Morphometric Analysis

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Morphometric analyses of eye size were conducted on zebrafish embryos at 3 days post fertilization, using a Nikon SMZ 745T microscope. Zebrafish were anesthetized in embryo medium containing 0.2 mg/ml tricaine (Ethyl 3-aminobenzoate methanesulfonate, Sigma, E10521). Lateral view images were captured with Nikon DS-Fi1 camera, and the size of eye was measured with Nikon NIS-Elements AR software. Analysis of the optic nerve was performed on 2 dpf embryos fixed in Dent's fixative (80% Methanol and 20% DMSO) overnight and stained with acetylated-tubulin (Sigma; T7451). Heads were isolated from stained embryos and oriented with the ventral aspect facing a coverslip on microscope cover glass. Image acquisition was performed on a Zeiss 710 inverted confocal microscope and ∼100 um optical sections were obtained and reconstructed. Volumetric measurements were calculated using Imaris software and 7.5 um×7.5 um×15 um ROIs along the optic nerve were analyzed between each condition. ROIs were restricted to portions of the optic nerve wherein all neurite processes coalesced to form the major aspect of the nerve.
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