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36 protocols using ab51502

1

Antibody Characterization for Cell Biology Research

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The following antibodies were used in this study: γ-tubulin (aa 38–53) GTU-88 (T6557, mouse, used at 1/10000 for WB and 1/1000 for IF/IHC, Sigma); Gamma-tubulin (434–451) TU-30 (ab27074, mouse, used at 1/1000, Abcam); GAPDH (MAB374, mouse, used at 1/1000, Chemicon); Cux1 (sc-13024, rabbit, used at 1/100, Santa Cruz); Cux1 (11733-AP, used at 1/100, Proteintech); GFP (A10262, chicken, used at 1/1000, ThermoFisher); CTIP2 (ab18465, rat, used at 1/500, Abcam); NeuN (MAB377, mouse, used at 1/500, Millipore); SATB2 (ab51502, mouse, used at 1/400, Abcam); TBR1 (ab31940, rabbit, used at 1/500, Abcam); Pax6 (PRB-278P, rabbit, used at 1/100, Eurogentec); Tbr2 (14–4875–80, rat, used at 1/200, eBioscience); PH3 (06–570, rabbit, used at 1/500, Millipore); Ki67 (NCL-L-Ki67-MM1, mouse, used at 1/500, Leica); Anti-tRFP (AB234, rabbit used at 1/5000 for WB, Evrogen); GCP4 (sc-271876, mouse, used at 1/1000 for WB, Santa Cruz); Anti-mouse antibody conjugated with HRP (W402B, goat, used at1/10000 for WB, Promega); Anti-rabbit antibody conjugated with HRP (W401B, goat, used at 1/100000 for WB, Promega). Anti-GCP2 antibody GCP2-01 (mouse monoclonal IgG2b) used for immunoprecipitation was described previously58 (link); Anti-GCP2 antibody GCP2-02 (mouse monoclonal IgG1, in the form of hybridoma spent culture supernatant, used at 1/10 for WB) was described previously58 (link).
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2

Immunohistochemical Labeling of Neural Markers

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Rat anti-BrdU (1:250, Abcam, #AB6326), rat anti-CTIP2 (1:500, Abcam, #AB18465), rabbit anti-CTIP2 (1:500, Abcam, #AB28448), rabbit anti-CUX1 (1:500, Santa Cruz, #sc-13024), rabbit anti-FITC (1:2000, Abcam, #AB19491), goat anti-FITC (1:1000, Novus Biolab, #NB600-493), mouse anti-SATB2 (1:200, Abcam, #AB51502), rabbit anti-TBR1 (1:500, Abcam, #AB31940).
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3

Multiplexed Labeling of Brain Cells

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Multiplexed RNAscope fluorescent in situ hybridization and immunohistochemistry was performed on fixed-frozen tissue. Probes against the following mRNAs were used: Pdgfra, Cspg4, and Fezf2 (ACDBio). The antibodies and dilutions were: Mouse anti-NeuN antibody (mab377, 1:500; Millipore), Mouse anti-GS antibody (mab302, 1:500; Millipore), Goat anti-Pdgfra antibody (AF1062, 1:200; R&D System), Rabbit Iba1 antibody (019–19741, 1:400; Wako), Chicken anti-GFP antibody (ab16901, 1:500; Millipore), Mouse anti-Satb2 (ab51502, 1:50; Abcam), Rat anti-Ctip2 (ab18465, 1:100, Abcam), Rabbit anti-Sox6 (ab30455, 1:500; Abcam), Rat anti-Mbp (mab386, 1:100; Millipore). We double-blinded the staining, imaging, and quantifications.
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4

Comprehensive Antibody Panel for Neuronal Characterization

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Rab10 (4262S, Cell Signaling Technology) for immunoblot, Rab10 (ab237703, Abcam) for immunofluorescence, pRab10 for immunoblot (ab230261, Abcam), pRab10 for immunofluorescence (ab241060, Abcam), Hsc70 (ab19136, Abcam), α-Tubulin (SC23948, Santa Cruz Biotechnology), parvalbumin, (NBP2-50036, NovusBio), NeuN (MAB377, Millipore), SATB2 (ab51502 Abcam), calretinin (MAB1568, Millipore), DARPP32 (MAB4230, R&D Systems), ChAT (NBP2-46620, NovusBio), DAT loop (6-8D6 Santa Cruz Biotechnology), tyrosine hydroxylase (TH) (ab76442, Abcam), CD68 (NBP2-33337SS, NovusBio), GFAP (AB5541, Millipore), Olig2 (MABN50 Millipore), KDEL receptor (sc-58774, Santa Cruz Biotechnology), TGN46 (MA3-063, ThermoFisher), LAMP1 (1D4B, DHSB), EEA1 (NBP2-36568, NovusBio), α-Synuclein (610786, BD Transduction Lab), Synuclein (ab51252, Abcam), VAMP2 (104 211, Synaptic Systems), Homer1 (160 006 Synaptic Systems), Rab8a (ab188574).
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5

Immunoblotting and Immunostaining Protocols

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For immunoblotting, a polyclonal rabbit antibody (Calarco et al. 2009 (link)) raised against amino acids 1–82 of nSR100 was used at 1:5000. Anti-tubulin (T6074, Sigma) was used at 1:5000. For immunostaining, mouse monoclonal anti-neurofilament (2H3 conditioned medium, Iowa Developmental Studies Hybridoma Bank) was diluted to 1:50 for whole-mount diaphragm staining and 1:100 for brain section staining. Mouse anti-NeuN (mab377, Millipore), mouse anti-Satb2 (ab51502, Abcam), rabbit anti-Tbr1 (ab31940, Abcam), and chicken polyclonal anti-β-galactosidase (ab9361, Abcam) were all diluted to 1:500. Chicken anti-MAP2 (ab5392, Abcam) was diluted to 1:10,000, mouse anti-Tuj1 (MRB-435P, Covance) was diluted to 1:750, and rabbit anti-Pax6 (PRB-278P, Covance) was diluted to 1:1500. For in situ hybridization, an anti-DIG antibody conjugated to alkaline phosphatase (Roche) was diluted to 1:5000.
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6

Protein Extraction and Western Blot Analysis

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C2C12 cells were lysed using a modified RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM ethylenediaminetetraacetic acid (EDTA), 1% NP-40, 1% glycerol, and a cocktail of protease inhibitors) for whole-cell extracts, or with a modified NE-PER Nuclear and Cytoplasmic Extraction Kit, as per the manufacturer’s instructions (Thermo Scientific, Waltham, MA, USA). Extracted proteins were then separated via SDS-PAGE and then transferred to a 0.45 μM polyvinylidene fluoride (PVDF) membrane (Millipore, Burlington, MA, USA) on a TRANS-BLOT SD apparatus (Bio-Rad, Hercules, CA, USA). Membranes were blocked with Tris-buffered saline plus 0.1% Tween-20 (TBST) containing 5% skim milk for 1 h at room temperature. Membranes were then incubated overnight at 4 °C in primary antibody made with the blocking solution. The primary antibodies used in this study included mouse SATB2 (ab51502; Abcam, Cambridge, UK; 1:1000), rabbit cleaved caspase 7 (9491S; Cell Signaling, Danvers, MA, USA; 1:1000), mouse myosin heavy chain (Development Studies Hybridoma Bank, DSHB Iowa City, IA, USA; MHC; 1:250), rabbit lamin A/C (2032; Cell Signaling; 1:1000), mouse tubulin (DSHB; 1:200), and mouse glyceraldehyde 3-phosphate dehydrogenase (#2118; GAPDH; 1:4000). Western blots were performed on three independent cell preparations in all cases (n = 3).
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7

Immunolabeling Neuronal Markers in Tissue

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Anti-GFP (1:1,000, Aves, GFP-1020), anti-RFP (1:1,000, Rockland Pharmaceuticals, 600-401-379), anti-mCherry (1:500, OriGene AB0081-500), anti-mKATE2 for Brainbow 3.0 (a gift from D. Cai), anti-SATB2 (1:20, Abcam ab51502), anti-CTIP2 (1:100, Abcam 18465), anti-CUX1 (1:100, SantaCruz 13024), anti-LDB2 (1:200, Proteintech 118731-AP), anti-FOG2 (1:500, SantaCruz m-247), anti-LHX2 (1:250, Millipore-Sigma ABE1402) and anti-TLE4 (1:300, Santa Cruz sc-365406) were used.
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8

Immunohistochemical Labeling of Neuronal Subtypes

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For ICC, slices were incubated for 20 min in 50% methanol with 1% H2O2 to quench endogenous peroxidases. The slices were rinsed with PBS supplemented with 0.2% Triton X-100 (T-PBS) and blocked for 1 hr in T-PBS, 0.4 g merthiolate and 1% normal goat serum before adding primary antibodies in respective dilutions for 2–3 days at 4°C. Slices were rinsed three times in T-PBS and then incubated in Alexa-fluorophore-conjugated secondary antibodies in T-PBS, 0.4 g merthiolate and 1% normal goat serum overnight at 4°C. Slices were rinsed three times with T-PBS before staining with DAPI (1:5000 in PBS for 2–5 min). After four final rinses (3x PBS, 1x Ampuwa water), slices were mounted in Fluoromount G (SouthernBiotech) on glass slides. Primary and secondary antibodies were used at the following dilutions: mouse anti-Satb2 for excitatory neurons (1:100, Abcam, ab51502, RRID:AB_882455), chicken anti-MAP2 for the somatodendritic compartment of neurons (1:500, Abcam, ab5392, RRID:AB_2138153); chicken anti-Calretinin (1:500, Merck, AB1550, RRID:AB_90764); goat anti-mouse IgG Alexa 568 (1:500, Thermo Fisher, A-11004, RRID:AB_2534072); goat anti-chicken Alexa 488 (1:500, Thermo Fisher, A-11039, RRID:AB_142924) and donkey anti-goat Alexa 568 (1:500, Thermo Fisher, A-11057, RRID:AB_142581).
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9

Immunofluorescence Staining of Mouse Tissue Sections

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Mouse tissues were fixed in 4% PFA in PBS overnight at 4 °C and embedded in paraffin. For immunofluorescence, tissue sections of 5 μm were cut, dewaxed and rehydrated. Antigen retrieval was performed by microwaving the sections on 0.01 M sodium citrate buffer (pH 6.0) for 4 min. Tissue sections were blocked in 5% normal donkey serum (NDS) for 30 min after sensing with PBS. Tissue sections then were incubated with primary antibodies diluted in 5% NDS overnight at 4 °C. Antibodies used were: mouse anti-SATB2 (1:10, ab51502, abcam), rat anti-CTIP2 (1:100, ab18465, abcam), and rabbit anti-MBP (1:500; 78896; Cell Signaling technology). After washing with PBS, sections were incubated with Alexa Fluor 488 donkey anti-mouse IgG (1:300; 715-545-150; Jackson ImmunoResearch) or R-Phycoerythrin AffiniPure F(ab’)2 Fragment Donkey Anti-Rat IgG (1:300; 712-116-153; Jackson ImmunoResearch) for 1 h and mounted using Vectorshield mounting media with DAPI (H1200, Vector Laboratories). Images were captured using a Zeiss Axio Imager microscope (Carl Zeiss GmbH, Oberkochen, Germany) and an installed AxioCam HRc camera (Carl Zeiss GmbH) with image acquisition via Zeiss Zen Pro software (v.2.3; Carl Zeiss GmbH).
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10

Comprehensive Antibody Panel for Neural Cell Characterization

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Antibodies for CTIP2 (ab18465, 1:500), CUX1 (ab54583, 1:500), PE-conjugated anti EGFR (ab231, 1:50), LGALS1 (ab25138, 1:1,000), Lin28 (ab46020, 1:1,000), PHH3 (ab5176, 1:250), PLZF (ab104854, 1:100), POU3F2 (ab94977, 1:1,000), SATB2 (ab51502, 1:50), SOX1 (1:1,000), SOX2 (ab79351, 1:500), TBR1 (ab31940, 1:200), TBR2 (ab23345, 1:200) were from Abcam. Antibodies for BrdU (347580, 50 μl per test), KI67 (556003, 1:1,000), phycoerythrin-conjugated (PE) SSEA-3 (560237, 20 μl per test), PE-conjugated F11R (552556; 20 μl per test), Alexa Fluor 647-conjugated TRA-1-60-647 (560850, 5 μl per test), Alexa Fluor 647-conjugated TUJ1 (560340, 1:500) were from BD Biosciences. Antibodies for DCX (AB2253, 1:5,000), O4 (MAB345, 1:25), RELN (MAB5364, 1:200), Tyrosine Hydroxylase (TH, AB152, 1:500) were purchased from Millipore. Antibodies for FABP7 (51010-1-AP, 1:100), S100B (15146-1-AP, 1:100) were from ProteinTech. Antibodies for AP2α (3B5 concentrated, 1:100) and PAX6 (supernatant, 1:16) were from DSHB. Antibody for NESTIN (MO15012, 1:500) was from Neuromics. Antibody for GFAP (Z0334, 1:2,000) was from DAKO. Antibody for β-3-Tubulin (PRB-435P, 1:1,000) was from Covance. Antibody for GLAST (ACSA-1; 130-095-822, 1:10) was from Miltenyi Biotec. Antibody for OTX2 (AF1979; 1:40) was from R&D. Antibody for FOXA2 (SC-6554; 1:100) was from Santa Cruz Biotechnology.
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