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14 protocols using fatostatin

1

Regulation of Lipid Metabolism by ChREBP and SREBP-1c

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ChREBP expression was knocked down by pcDNA™6.2-GW/EmGFP-ChREBP. Detailed information regarding siRNA targeting ChREBP has been described previously (Zhang et al., 2015 (link)). Differentiated adipocytes were incubated using the siRNA/Lipofectamine complex in serum-free medium for 6 h and then switched to a basal medium for 48 h.
The activation of SREBP-1c was blocked using the inhibitor fatostatin (10 μmol/L) (Sigma, USA). After 24 h, cells were lysed and the protein concentration was determined using the method of Lin et al (2007). Equal amounts of protein were analyzed by Western blotting using antibodies specific for SREBP-1c (USA) and β-actin (USA).
ChREBP-siRNA cells and SREBP-1c blocked cells were cultured in glucose-free and/or serum-free DMEM medium and subsequently cultured in the absence or presence of glucose (20 mmol/L) with 0 or 200 nmol/L insulin, as indicated in the figure legends. Sodium pyruvate (2 mmol/L) (Sigma-Aldrich) was added to the medium to replace glucose as carbon source when cells were cultured in glucose-free medium. T0901317 (1 μmol/L) (Sigma) was used as agonist to promote the activation of LXRα. These concentrations were chosen base on initial dose-response experiments (data not shown).
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2

Colon Cancer Cell Lines and Knockdowns

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Human colon cancer cell lines DLD1 and HCT116 cells were cultured in DMEM and McCoy’s 5A supplemented with 10% fetal bovine serum (FBS, Sigma-Aldrich, MO, USA) and 1% penicillin–streptomycin, respectively. These cells were purchased from ATCC and authenticated using short tandem repeat (STR) DNA profiling in March 2016 (Genetica, OH, USA). Primary colon cancer Pt130 cells were established from patient-derived xenografts (PDX) as described previously40 (link). Briefly, this cell line, obtained from a 63-year old male with moderately differentiated colonic adenocarcinoma, contains BRAF (V600E) and TP53 mutations and was authenticated using short tandem repeat (STR) DNA profiling as a unique cancer cell line (Genetica). Stable SREBP1, SREBP2 and SCAP knockdown cells were generated using lentivirus-based RNAi40 (link)–42 (link). The shRNA targeting sequences for SREBP1 (also named SREBF1) are as the following: 5′-GCCATCGACTACATTCGCTTT-3′ (a) and 5′-CCAGAAACTCAAGCAGGAGAA-3′ (b); for SREBP2 (also named SREBF2): 5′-CCTCAGATCATCAAGACAGAT-3′ (a) and 5′-GACCTGAAGATCGAGGACTTT-3′ (b); and for SCAP: 5′-GCTCAACGGTTCCCTTGATTT-3′ (a) and 5′-GCTCTGGTGTTCTTGGACAAA-3′ (b). The non-targeting control shRNA lentivirus plasmid (MISSION, SHC002) was obtained from Sigma-Aldrich (MO, USA). Fatostatin and 25-HC were purchased from Sigma-Aldrich.
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3

Preparing Fatostatin and Phenylthiourea Solutions

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Fatostatin and phenylthiourea were obtained from Sigma (St.
Louis, MO, USA). Stock solutions were prepared by dissolving in dimethyl sulfoxide
(Nacalai Tesque, Kyoto, Japan). 2-Phenoxyethanol was obtained from Wako Chemical
(Osaka, Japan).
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4

Evaluating Anticancer Effects of Inhibitors

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Cells were seeded onto 96-well plates and incubated for 24 to 72 h. Cell proliferation was measured using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT; Sigma-Aldrich, Saint Louis, MO) colorimetric assay. Cells were treated with Fatostatin (Sigma), Mevastatin (Sigma) and YM-53601 (Cayman chemicals, Ann Arbor, MI) at or above their reported IC50 values in cells. Liver cancer cells (HepG2 and Huh7, 1.5 × 105 cells) were seeded onto 6-well plates and incubated for 36 h with of A1938 (30 µM), a UQCRB inhibitor. A1938 was dissolved in DMSO.
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5

Regulation of Lipid Metabolism in Prostate and Lung Cancer Cells

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All the cell lines were from from ATCC (Manassas, VA). LNCaP, DU145, PC3 and A549 cells were cultured in RPMI1640 media with 10% FBS (fetal bovine serum). PWR-1E, RWPE-1, WPE-NA22 and WPE-NB14 were maintained in keratinocyte growth medium with 5 ng/mL human recombinant epidermal growth factor and 0.05 mg/mL bovine pituitary extract; and as per experimental requirements, these cells were also cultured with 10% FBS or serum free keratinocyte growth medium. Media, serum and other cell culture materials were from Invitrogen-Life Technologies (Carlsbad, CA). Silibinin and fatostatin were from Sigma (St Louis, MO) and dissolved in DMSO as stock solution. The final concentration of DMSO in the culture medium during different treatments did not exceed 0.1% (v/v). Antibodies for SREBP1, HMGCR, and TATA-binding protein (TBP) were obtained from Abcam (Cambridge, MA). Total and/or phosphorylated antibodies for SREBP1, SREBP2, FASN, ACC, ACYL, AMPK, and AMACR were from Cell Signaling Technologies (Danvers, MA). Tubulin antibody was from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Compound C was from Calbiochem (La Jolla, CA). R1881 was from Perkin Elmer (Waltham, MA). ECL detection system and anti-mouse HRP-conjugated secondary antibody were from GE Healthcare (Buckinghamshire, UK).
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6

Inhibiting Lipogenesis and Apoptosis

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FASN inhibitors Orlistat (#04139), Cerulenin (#C2389), C75 (#C5490), and SREBP inhibitor Fatostatin (#F8932) were all purchased from Sigma Aldrich (St. Louis, MO, USA). Two hundred times diluted TaqMan probes from Life Technologies (Carlsbad, CA, USA) specific for GAPDH (#Hs02758991_g1), FASN (#Hs01005622_m1), SREBP1 (#Hs01088679_g1), SREBP2 (#Hs01081784_m1), and CDKN1A (#Hs00355782_m1) were used for quantitative PCR. Primary antibodies for western blotting targeting β-actine (Santa Cruz Biotechnology, Dallas, TX, USA, AC-15), FASN (Santa Cruz Biotechnology, Dallas, TX, USA, SC-55580), and PARP (Santa Cruz Biotechnology, Dallas, TX, USA, SC-8007) were diluted to 1:1000. Secondary anti-mouse (1:2000, #P0260) and anti-rabbit (1:1000, #P0217) antibodies were purchased from Agilent/Dako, Glostrup, Denmark. Antibodies for flowcytometry included CD3 (145-2C11), CD4 (RM4-5), CD8 (53-6.7), CD7, CD26, Annexin V-FITC, and TCRVβ-PE and were purchased from BD Biosciences (Franklin Lake, NJ, USA).
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7

Preparation of Chemical Stock Solutions

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Fenofibrate and gemfibrozil were obtained from Tokyo Chemical Industry (Tokyo, Japan). Methimazole, propylthiouracil, thyroxine, and fatostatin were obtained from Sigma (St. Louis, MO, USA). Stock solutions of these chemicals were prepared by dissolving in dimethyl sulfoxide (Nacalai Tesque, Kyoto, Japan). 2-Phenoxyethanol was obtained from Wako Chemical (Osaka, Japan).
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8

Fasting and Fatostatin Effects on Mice

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All animal experiments conducted in this study were approved by the Institutional Animal Care and Use Committee (IACUC) of the Air Force Medical University of PLA in China (No. IACUC-20181204) and were performed in accordance with the Guide for the Care and Use of Laboratory Animals, 8th edition. C57BL/6J mice were housed in a pathogen-free animal facility at 22±2 ℃ under a controlled 12-h light-dark cycle. We performed the following studies with male litter FASN-2A-GLuc mice: (I) a fasting and refeeding study, in which mice were randomly split into 3 groups (n=5–6 mice/group)—the ad libitum feeding group, the fasting group (fasting for 24 h), and the refeeding group (fasting for 24 h and refeeding for 4 h); and (II) a fatostatin-administration study (n=5– 6 mice/group), in which mice were given glucose and fructose solutions (Sigma-Aldrich, St. Louis, MI, USA) and treated intraperitoneally with either corn oil (control) or fatostatin (30 mg/kg; Selleck Chemicals, Houston, TX, USA) daily for 6 days.
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9

LDL Regulation by PCSK9 Inhibitors

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d-glucose, d-mannitol, glutamine, sodium pyruvate, sodium lactate, 2-deoxyglucose, crystal violet, fasentin, fatostatin, catalase, lipoprotein-deficient serum (LPDS), vinculin antibody (V9131) and thiazolyl blue tetrazolium bromide (MTT) were purchased from Sigma-Aldrich (MO, USA). Cytochalasin B was purchased from MP Biomedicals (OH, USA). Recombinant PCSK9 protein was purchased from BioLegend (CA, USA). LDLc was purchased from Lee Biosolutions (Missouri, USA) and reconstituted as per manufacturer’s instruction. PCSK9 (sc-66996), Transferrin Receptor (TfR; sc-7087), PCNA (sc-56), β-actin (sc-1615), procaspase 3 (sc-7272), SREBP-1 (sc-8984), SREBP-2 (sc-5603), GAPDH (sc-20357), Histone H1 (sc-10806), pERK (sc-7383), ERK (sc-154), Insulin (sc-8033), HRP-conjugated secondary antibodies, and sorafenib (sc-357801A) were purchased from Santa Cruz Biotechnology (CA, USA). LDLR (ab-30532) antibody was purchased from Abcam (MA, USA). Antibody for PARP (9542) was purchased from Cell Signaling Technology (MA, USA). Mouse PCSK9 antibody (AF-3985) was purchased from R&D Systems (MN, USA). Low-density lipoprotein from human plasma, DiI complex (DiI-LDL), was purchased from Life Technologies (OR, USA). BD Matrigel™ was purchased from BD Biosciences (MA, USA).
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10

Lipid Metabolism Regulation in Prostate Cancer

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Human PCA LNCaP, DU145, 22Rv1, and C4-2B cells were purchased from ATCC (Manassas, VA). LNCaP-vehicle control (LNCaP-VC) and CPT-knockdown cells (LNCaP-CPT-KD) were earlier generated with Sigma TRCN0000036279 (CPT-KD) and the non-targeting control SHC002 purchased from the Functional Genomics Core (Boulder, CO) [30 ]. Preparation of the lentiviral particles was done as described [29 (link)]. RPMI1640 medium and other cell culture materials were from Invitrogen Corporation (Gaithersburg, MD). Delipidized fetal bovine serum was from Gemini Bio-products (West Sacramento, CA). ExoQuickTM and exosome-free FBS (Exo-FBSTM) were from System Biosciences (Mountain View, CA). Antibodies for HIF1α, HIF1β, phosphorylated and/or total ACC, ACLY, hexokinase (I and II), PKM2, FASN, ACSL1, AceCS1, SCD1, mTOR, Akt, AMPK, and anti-rabbit peroxidase-conjugated secondary antibody were from Cell Signaling (Beverly, MA). Antibody for α-tubulin was from Lab Vision Corporation (Fremont, CA). ECL (Enhanced Chemiluminescence) detection system and anti-mouse HRP-conjugated secondary antibody were from GE Healthcare (Buckinghamshire, UK). Etomoxir, celecoxib, fatostatin and silibinin were from Sigma (St Louis, MO). All other reagents were obtained in their commercially available highest purity grade.
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