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40 protocols using ab86607

1

Western Blot Analysis of Signaling Proteins

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Protein extracts from cells or immunoprecipitation samples were prepared using detergent-containing lysis buffer. Total protein (50 µg) was subjected to SDS-PAGE and transferred to PVDF membrane (Millipore). Antibodies against STAT3 (ab119352), p-STAT3 (p-Y705, ab76315), SRC (ab109381), BCL-XL (ab32370), active CASPASE-3 (ab32351), MMP2 (ab86607) or MMP9 (ab58803) were from Abcam. Antibodies against cleaved CASPASE-7 (p20, D198; orb159339) or cleaved CASPASE-9 (p35, D315; orb159343) were from Biorbyt. Antibodies against PIWIL2 (sc-67502) or p-SRC (p-Tyr416, D4964) were from Santa Cruz or Cell Signaling Technology, respectively. Antibody against FLAG tag (F1804) or 6×HIS tag (SAB2702218) was from Sigma, while antibody against β-ACTIN (60008-1-Ig) was from Proteintech. Membranes were incubated overnight at 4 °C with primary antibody and visualized with Immobilon Western Chemiluminescent HRP Substrate (Millipore).
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2

Western Blot Analysis of MMP2, MMP9, and RORA

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Total proteins extracted using RIPA buffer (Roche, Mannheim, Germany) were quantified by BCA kit (Roche). Then, 30 µg proteins were separated and membrane-transferred by standard western blot procedures. The primary antibodies, including matrix metalloproteinase-2 antibody (anti-MMP2; ab86607; Abcam, Cambridge, MA, USA), matrix metalloproteinase-9 antibody (anti-MMP9; ab137867; Abcam), anti-RORA (ab70061; Abcam) and anti-GAPDH (ab181602; Abcam), and the secondary antibodies (ab205718 and ab505719; Abcam) were used to probe proteins. The Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA) was utilized to visualize the protein signals. The expression data were quantified by using Image J software (version 1.46; NIH, Bethesda, MA, USA).
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3

Immunohistochemical Analysis of TLR4 Signaling

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Formalin-fixed paraffin sections were deparaffinized in xylene and rehydrated through an ethanol series. The sections were then immersed in 0.3% hydrogen peroxidase for 15 min to deplete endogenous peroxidase and exposed to high pressure to activate their antigenicity. Sections were then incubated with blocking solution (PBS, 3% of BSA, 0.1% Triton-X 100) at room temperature for 30 minutes. The primary antibody of TLR4 (1:20, ab22048; Abcam), MD2 (ab24182; Abcam), Myd88 (ab2068; Abcam), NF-κB (ab7970; Abcam), IL-6 (ab6672; Abcam), TGF-β (ab66043; Abcam), VEGF (ab1316; Abcam), EGF (ab115562; Abcam), and MMP2 (ab86607; Abcam) were added and incubated at 4 °C overnight. Sections were washed with PBS, incubated with FITC–conjugated goat anti-mouse secondary antibody at room temperature for 1 hour (1:400), and washed three times with PBS at room temperature for 10 minutes. Images were obtained with a fluorescence microscope (OLYMPUS DP70; Olympus Co., Tokyo, Japan).
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4

Immunohistochemical Analysis of Tissue Proliferation

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The Polink-2 Plus-horseradish peroxidase (HRP) IgG detection system (ZSGB-Bio, Beijing, China) was utilized for immunohistochemistry, and liver sections were treated with paraffin and rehydrated in ethanol. After 2.5 minutes of repair with citrate buffer at 120 ℃, the sections were incubated with 3% hydrogen peroxide for 10 minutes at room temperature. Sections were incubated overnight with rat antibodies against proliferation cell nuclear antigen (PCNA, ZM-0213, ZSGB-Bio, Beijing, China) and MMP2 (ab86607, 1:500, Abcam), and rabbit antibodies against MMP9 (ZA-0562, ZSGB-Bio, Beijing, China) at 4 ℃. The sections were incubated with HRP-coupled IgG (Kit-5030, Maixin Biotech. Co., Ltd., Fujian, China) for 15 minutes at room temperature. The sections were then stained with diaminobenzidine solution and counter-stained with hematoxylin. Following dehydration and embedding, the sections were observed under a BX63F optical microscope (Olympus).
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5

Multiprotein Western Blot Analysis of Heart and Spleen Tissues

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Tissue protein of heart and spleen was lysed by the RIPA lysate (50:1) and tissue disrupter and quantified by the BCA method. The quantified homogenate was added to loading buffer, and the mixture was boiled and denatured at 99°C. Each lane was loaded with 10 ul of proteins. After electrophoresis at 100 V for 1–1.5 h, proteins were transferred to PVDF membranes at 300 mA for 1–1.5 h. Afterwards, the membrane blocked with 5% skim milk for 1–1.5 h at room temperature, incubated on a shaker, and washed with TBS-T. Western blot analysis was conducted using anti-AT1 (ab18801; Abcam, United States), anti-MCP-1 (ab25124, Abcam, United States), anti-CCR2 (PAI-27409), anti-TGF-β1 (3711s, Cell Signaling Technology, Germany), anti-Smad3 (ab28379, Abcam, United States), anti-MMP2 (ab86607, Abcam, United States), anti-Col III (ab7778, Abcam, United States), anti-VEGF (ab10972, Abcam, United States), anti-CD31 (ab24590, Abcam, United States) and anti-GAPDH (ab8245, Abcam, United States) at 4°C overnight. After incubation with the appropriate secondary antibodies at 37°C for 2 h at room temperature, the membrane treated with ECL for 1 min at room temperature. The final expression of each protein was normalized by GAPDH and grayscale analysis was performed using Image J software.
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6

Xenograft Formation and Analysis in Nude Mice

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Ten female BALB/C nude mice aged 6 weeks (Beijing Vital River Laboratory Animal Technology Co., Ltd., Beijing, China) were maintained in specific‐pathogen‐free conditions and used for xenograft studies following approval by the Animal Care and Use Committee of Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, People's Hospital of Henan University. For xenograft formation, we gave each mouse a total volume of 200 μl PBS containing 5 × 106 lentivirus‐transduced ECA109 cells by subcutaneous injection into the left flanks. Each group included five mice. Xenograft tumor growth rates were monitored weekly by evaluating volume under the use of the 0.5 × (length × width2) formula. Four weeks later, we collected the xenograft tumors from the mice. Paraffin‐embedded xenograft tumors were processed by immunohistochemistry using antibodies against ki‐67 (ab15580, 1:100; Abcam), Bax (33–6400, 1:300; Invitrogen), Bcl‐2 (MA5‐11757, 1:50; Invitrogen), MMP9 (ab76003, 1:1000; Abcam), and MMP2 (ab86607, 1:100; Abcam), biotinylated anti‐mouse or anti‐rabbit IgG second antibody (ab64255 or ab64256, 1:100, Abcam) and 3,3‐diaminobenzidine tetrahydrochloride solution (MedChemExpress), as described elsewhere.37
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7

Western Blot Analysis of Apoptosis and ECM Proteins

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RIPA lysis buffer (Beyotime) and BCA protein assay kit (Beyotime) were utilized for total protein extraction and quantification, respectively. Then, equal amount of protein (20 μg/lane) was segregated by SDS-PAGE gel and then shifted into PVDF membrane (Solarbio). After blocked in 5% non-fat milk for 1 h, the membrane was probed with specific primary antibodies at 4 °C overnight, and subsequently probed with HRP-conjugated secondary antibody (1:20,000, ab205718 or ab205719, Abcam, Cambridge, MA, USA) for 2 h. The blots were exposed to enhanced BeyoECL Moon (Beyotime), and the bands density was assessed via Image J software (NIH, Bethesda, MD, USA). The primary antibodies obtained from Abcam included anti-B-cell lymphoma-2 antibody (Bcl-2; 1:1000, ab32124), anti-BCL2-associated X protein antibody (anti-Bax; 1:1000, ab32503), anti-matrix metalloproteinase 2 (MMP2) (1:1000, ab86607) antibody, anti-MMP9 (1:1000, ab137867) antibody, anti-PPM1A (1:500, ab14824) antibody, and β-actin antibody (1:5000; ab6276). Relative protein expression was normalized by internal reference β-actin.
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8

Protein Expression Analysis of Metastatic Markers

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Cells treated under specific conditions were lysed using a whole-cell lysis buffer (50 mM HEPES, 150 mM NaCl, 1% Triton X-100, 5 mM EGTA, and a protease inhibitor cocktail). Equal amounts of protein extracts were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes using standard techniques. Membranes were probed with specific antibodies against MMP2 (ab86607, Abcam, Cambridge, UK), MMP9 (sc-376861, Santa Cruz Biotechnology, Santa Cruz, CA, USA), E-cadherin (sc-8426), vimentin (sc-6260), β-catenin (sc-7963), p85 (#sc-1637, Cell Signaling Technology, Danvers, MA, USA) Akt (#4691), p-Akt (#4060), and α-tubulin (sc-5286). The antibodies were diluted in TBS solution containing 2% skim milk and incubated overnight at 4 °C. Signals were detected using an Image Station 4000MM image analyzer (Kodak, Rochester, NY, USA).
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9

Comprehensive Cellular Signaling Pathway Assay

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DMEM (Gibco, Grand Island, NY, USA), antibiotic–antimycotic solution (Gibco, Grand Island, NY, USA), foetal bovine serum (FBS) (Gibco, Grand Island, NY, USA), SYBR Green Master Mix (Takara Bio, Takara, Japan), PCR primers (Solarbio Life, Beijing, China), an RNase inhibitor (Sangon Biotech, Shanghai, China), Transwell chambers (Corning, Corning, NY, USA), Matrigel matrix (Corning, Corning, NY, USA), paclitaxel (Aladdin, Shanghai, China), and chromatography-grade acetonitrile (Merck, Darmstadt, Germany) were used. Antibodies specific for Bcl-xL (ab32370), cyclin D1 (ab134175), Jagged1 (ab109536), matrix metallopeptidase 2 (MMP-2) (ab86607), MMP-9 (ab137867), signal transducer and activator of transcription 3 (STAT3) (ab68153), phosphor-STAT3 (ab267373), survivin (ab76424), β-Actin (ab8226), horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (ab205719), and goat anti-rabbit IgG (ab205718) were purchased from Abcam (Cambridge, England). Antibodies specific for Src (#2109), phospho-Jak family (#32901), Jak1 (#3332), and IL-6 (#12153) were obtained from Cell Signaling Technology (Danvers, MA, USA). All other chemicals were obtained from Shanghai Sinopharm (Shanghai, China), unless otherwise indicated.
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10

Antibodies for ECM Protein Analysis

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Mouse monoclonal antibody against mouse β-actin (ab8277), mouse monoclonal antibody against mouse Mmp2 (ab86607), rabbit polyclonal antibody against mouse Mmp9 (ab38898), rabbit polyclonal antibody against mouse Acta2 (ab5694), rabbit monoclonal antibody against mouse Vim (ab92547), rabbit polyclonal antibody against mouse Col1a1 (ab34710), mouse monoclonal antibody against mouse Tgfb1 (ab27969), and rabbit polyclonal antibody against mouse Fn1 (ab2413) were purchased from Abcam (Cambridge, MA). Rabbit monoclonal antibody against mouse Reck (D8C7) was purchase from Cell Signaling Technology (Beverly, MA).
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