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10 protocols using ab64085

1

TMEM16A Localization in Calu3 Cells

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For TMEM16A staining in Calu3 airway cells, cells seeded onto glass coverslips were fixed with a pre-cooled 3:1 mix of methanol:acetone for 10 min at −20 °C, washed in PBS with Ca2+ and Mg2+ (PBS++), blocked with 5% BSA/PBS++ for 30 min at room temperature, incubated with rabbit anti-TMEM16A antibody (1:100 in 1%BSA/PBS++; #ab64085, Abcam, Cambridge, UK) for 1h at 37 °C, washed, incubated with Alexa Fluor 488-labeled donkey anti-mouse IgG (1:400 in 1%BSA/PBS++, Invitrogen, Carlsbad, California, USA) and counterstained with Hoe33342 (1:200) for 1 h at room temperature. Cells were then washed and mounted in fluorescence mounting medium. Plasma membrane (PM) staining was quantified using ImageJ and Zen. The quantitative analysis was performed by measuring the fluorescence intensity in the region of interest (ROI). ROIs are reflected by the plasma membrane and were detected by the analysis software. The settings for excitation and exposure time were identical for all measurements.
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2

Detecting Protein Interactions via Duolink PLA

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Interactions between endogenous proteins were detected using a Duolink PLA kit (Bioscience; Detection Kit 488), according to the manufacturer’s instructions. The primary antibodies used for this assay were anti-ANO1 (1:100; ab64085, Abcam) and anti-14-3-3γ (1:100, ab118877, Abcam) antibodies. The PLA probe anti-rabbit minus binds to the anti-ANO1 antibody, whereas the PLA probe anti-mouse plus binds to the anti-14-3-3γ. U251 cells growing on coverslips were transfected with Sc shRNA or ANO1 shRNAs, and incubated for 72h. Cells were observed using a Nikon A1 confocal microscope
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3

Protein Expression Analysis of Airway Epithelial Cells

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The following primary antibodies were used in this study: rabbit monoclonal anti-TMEM16A [SP31] (ab64085; Abcam); mouse monoclonal anti-GAPDH [6C5] (ab8245; Abcam); mouse monoclonal anti-MUC5AC [45M1] (MA1-38223; Invitrogen); mouse monoclonal anti-Vinculin [7F9] (sc-73614; Santa Cruz); rabbit monoclonal anti-Ki-67 [SP6] (ab16667; Abcam); mouse monoclonal anti-ZO-1 [1A12] (33-9100; Invitrogen); rabbit monoclonal anti-p63 [EPR5701] (ab124762; Abcam); rabbit polyclonal anti-CC16 (RD181022220-01; BioVendor); and rabbit polyclonal DNAI1 (HPA021649; Sigma-Aldrich).
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4

TMEM16A Protein Detection by Western Blot

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Cells were lysed in RIPA buffer 1X (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS) containing Complete Protease Inhibitor Cocktail (Roche, NJ, USA). The protein concentration in lysates was quantified using the Quantum Protein Assay kit (Euroclone). Total lysates were electrophoresed (30 μg per lane) with NuPAGE Novex Bis-Tris 4–12% gel (Life Technologies) and transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA, USA) for Western blotting. The TMEM16A protein was immunodetected with the r [SP31] rabbit monoclonal antibody (ab64085, Abcam; 1:1000). The secondary antibody was anti-rabbit HRP (Millipore; 1:5000). Membranes were also stripped with the Restore Western Blot Stripping Buffer (Thermo Fisher Scientific Inc.) and incubated with the mouse monoclonal C464.8 (Merck Millipore) antibody against Na+/K+-ATPase β1 (1:6000) followed by anti-mouse HRP-conjugated secondary antibody (Ab 97023, Abcam; 1:10000). All antibodies were dissolved in 5% skimmed-milk in Tris-buffered saline—Tween 20. Protein bands were visualized using the ECL Advanced Western Blotting Detection Kit (GE Healthcare Europe, Little Chalfont, UK). Direct recording of the chemiluminescence was performed using the Molecular Imager ChemiDoc XRS System (Bio-Rad).
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5

Visualizing ANO1 and 14-3-3γ in U251 cells

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U251 cells growing on coverslips were transfected with Sc shRNA or 14-3-3 shRNAs and incubated for an additional 72 h. Cells were fixed in 4% PFA for 20 min at RT and then incubated with WGA647 conjugate (1:200; Thermo) at 4 °C for 15 min to preferentially label the plasma membrane. Cells were permeabilized with Triton X-100 (0.5% in PBS) and blocked with 5% BSA. Cells were incubated overnight at 4 °C with anti-ANO1 (1:100; ab64085, Abcam) or anti-14-3-3γ (1:100; ab118877, Abcam) antibodies. After washing, cells were incubated with DyLight 488- or 549-conjugated secondary antibodies (1:400; Jackson Labs) for 1 h at RT. Cells were washed, mounted, and observed under a Nikon A1 confocal microscope.
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6

Protein Isolation and Western Blot Analysis

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Protein was isolated from filter-grown BCi-NS1 cells using a lysis buffer containing 25 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM EDTA, 5% glycerol, 0.43% Nonidet P-40, 100 mM dithiothreitol (both from PanReac AppliChem, Barcelona, Spain) and 1× protease inhibitor mixture (Roche, Basel, Switzerland). Proteins were then separated by 8.5% SDS-PAGE and transferred to a PVDF membrane (GE Healthcare, Munich, Germany). Membranes were incubated overnight at 4 °C with rabbit primary antibodies against TMEM16A (#ab64085, Abcam, Cambridge, UK) and α-SLC26A9 (Davids Biotechnologie, Regensburg, Germany) and a mouse primary antibody against CFTR (#596, Cystic Fibrosis Foundation Therapeutics, Bethesda, MA, USA). Rabbit anti-actin (#A2066; Sigma-Aldrich, St. Louis, MO, USA) was used as a loading control. Membranes were then incubated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit/sheep anti-mouse secondary antibodies at room temperature for 2 h, and immunoreactive signals were visualized using a SuperSignal HRP chemiluminescence substrate-detection kit (#34577; Thermo Fisher Scientific, Waltham, MA, USA).
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7

CTC Enrichment and Enumeration

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CTCs were sorted by FCM (BD, USA) after staining with anti-DOG-1 (ab64085, Abcam, USA) and anti-CD45 (ab214501, Abcam, USA). Alexa Fluor® 488 Goat Anti-Rabbit IgG H&L (ab150077, Abcam, USA) were used to conjugate with anti-DOG-1 antibody. We considered the DOG-1+/CD45- cells as CTCs; meanwhile, the number and percentage of cells were recorded according to the same gating strategy.
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8

Quantifying TMEM16A Expression in Hypopharyngeal Carcinoma

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Formalin-xed and para n-embedded sections of hypopharyngeal carcinoma 57 tissues were used for immunohistochemistry.4-µm-thick para n blocks were incubated with anti-TMEM16A antibodies (1:100, Abcam, ab64085) at 1:100 overnight at 4 ℃. After rewarming and incubating with the secondary antibody (1:400, Absin, abs20002) for 30 min, signals were visualized using diaminobenzidine. Finally, the expression of TMEM16A was evaluated according to the area and expression intensity. The intensity of immunoreactivity was scored as follows: 0 for no staining, 1 for weak staining, 2 for moderate staining, and 3 for strong staining. The IHC score was determined by the multiplication of the intensity score (0-3) and the percentage (0-100%) of immunopositive cells, resulting in the nal IHC score ranging from 0 to 300.
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9

Antibody Usage for ANO1, TRIM23, and TRIM21

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The following commercially available antibodies were used: rabbit monoclonal anti-human ANO1 (ab64085) and rabbit polyclonal anti-mouse ANO1 (ab53212), Abcam; rabbit anti-human/mouse TRIM23 (HPA-039605) and mouse anti-FLAG (F1804), Sigma-Aldrich; mouse anti-HA (MMS-101P), Covance Research Products Inc; mouse anti-V5 (P/N-46-0705) and anti-Xpress (R910-25), Invitrogen; and mouse anti-human TRIM21 (sc-25351), anti-ubiquitin (sc-8017), anti-GAPDH (sc-365062), and anti-actin (sc-47778), Santa Cruz Biotechnology.
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10

Immunofluorescence Analysis of DOG-1 and CD45

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CTC lines were spun down onto poly-L-lysine-functionalized glass slides with Spintrap,23 (link) and postfixed with 4% paraformaldehyde for 20 min followed by washing with PBS. Then, cells were permeabilized with 0.1% Triton X-100 for 10 min, blocked with 1% BSA, and immunostained with the primary antibodies at 4°C overnight. The relevant primary antibodies were anti-DOG-1 (ab64085, Abcam, USA) and anti-CD45 (ab8216, Abcam, USA).The secondary antibodies were Alexa Fluor® 488 goat anti-rabbit IgG (ab150077, Abcam, USA) and Alexa Fluor® 647 goat anti-mouse IgG (ab150115, Abcam, USA). Finally, nuclei were stained with DAPI (Beyotime, Shanghai) for 15min.
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