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18 protocols using bergamo 2

1

Imaging Aged Choroid Plexus Explants

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ChP explants were dissected from 3–4 m.o. and 22–24 m.o. animals (n = 3–4 mice per age). Explants were allowed to recover in artificial cerebrospinal fluid (ACSF) containing (in mM): 119 NaCl, 2.5 KCl, 2.5 CaCl2, 1.3 MgCl2, 1 NaH2PO4, 26.2 NaHCO3 and Dextrose (292–298 mOsm/L), bubbled with carbogen (95% O2/5% CO2) for 10 min at 37 °C, then maintained at RT for the entire duration of the experiment. Live-cell imaging was performed using a custom built 2-PM (Bergamo II, Thorlabs, USA) with a Nikon NIR, × 60 1.0 NA objective. 2-PM excitation was achieved using a mode-locked Ti: sapphire laser (Coherent Ultra II).
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2

Tracking T Cell Migration in Lymph Nodes

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Popliteal LNs were carefully excised 12 h after adoptive transfer of eGFP+ or DsRed+ naive CD8+ and CD4+ T cells via the tail vein and injection of LYVE-1 antibody labeled with eFluor615 into the footpads. LNs were fixed with 1% paraformaldehyde in PBS for 6 h, dehydrated with 30% sucrose solution for 30 min and embedded in tissue-freezing medium. LNs were sectioned into 50-μm slices on a Cryostat and imaged with a commercial two-photon microscope (Bergamo II, Thorlabs) with a NA 0.6 objective (XLUMPlanFL 10XW, Olympus).
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3

In vivo Two-Photon Calcium Imaging

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In vivo two-photon calcium imaging95 (link) was performed with a customized commercially available Bergamo II (Thorlabs) two-photon laser scanning microscope96 (link) using a pulsed femtosecond Ti:Sapphire laser (Mai Tai HP Deep See, Spectra-Physics) and controlled by ScanImage 4 (ref. 97 (link)). The calcium indicator GCaMP6m98 (link) and the structural marker mRuby2 (ref. 99 (link)) were both excited with a wavelength of 940 nm. Emitted photons were filtered for reflected laser light (720/25 short-pass filter), spectrally separated using a dichroic beamsplitter (FF560) and two band-pass filters (500–550 nm for GCaMP6m; 572–642 nm for mRuby2) and detected using two GaAsP photomultiplier tubes. Laser power was kept between 18 and 35 mW, depending on the depth of imaging and the quality of the chronic window. Images were acquired from two alternating planes, 40 μm apart, using a ×16 0.8-NA objective (Nikon) mounted on a piezoelectric stepper (Physik Instrumente). The xy image dimensions were 325 × 250 μm (512 × 512 pixels), and each image plane was acquired at a rate of ~15 Hz (total frame rate of ~30 Hz).
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4

Multi-modal Optical Imaging and Optogenetic Stimulation

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Images were acquired using a modified Thorlabs Bergamo II. Samples were excited using a Coherent Chameleon Vision II Ti:Sapphire laser emitting a 920 (GCaMP6s, green-Camuiα, and FLIM-AKAR) or 1000 (cADDisRed-Up, cADDisGreen-Down, and experiments performing multi-color imaging) nm beam and emission was detected using cooled Hamamatsu H7422P-40 GaAsP photomultiplier tubes, with light collected through a 16x water immersion objective (Olympus). The PMT signal was amplified using Becker-Hickl fast PMT amplifiers (HFAC-26) and passed to a PicoQuant TimeHarp 260 photon counting board, which was synchronized to the laser emission by a photodiode (Thorlabs DET110A2) inverted using a fast inverter (Becker-Hickl A-PPI-D). The TimeHarp signal was acquired by custom software (FLIMage, Florida Lifetime Imaging) which was also used to control the microscope. For intensity imaging, all detected photons within a pixel were summed together, regardless of arrival time relative to the excitation pulse. Optogenetic stimulation was performed by excitation with a blue LED (Thorlabs M470L4) through a liquid light guide (Thorlabs LLG5–8H) for an incident intensity at the sample of ~XXX. 128×128 pixel images were acquired at a rate of ~4 Hz.
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5

Intrinsic Hemodynamic Imaging of Visual Cortex

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Intrinsic signal imaging was performed on the STOMPM microscope or on the Thorlabs Bergamo II. The cortex was illuminated with blue light to obtain a blood vessel map, after which collimated 630 nm light from an LED (Thorlabs) was directed onto the surface of the brain to measure intrinsic hemodynamic responses. Visually evoked responses were collected at 50 Hz using an Andor Xyla camera. Visual stimuli were blockwise grating stimuli (8s on, 8s off, 0.06-0.1 cycles per degree, 16 directions).
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6

Monitoring Hippocampal Activity in Mice

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Seven to fourteen days after the craniotomy surgery, we started monitoring hippocampal activity. The same procedure was followed for all mice before, during, and after the cuprizone diet period. Mice were anesthetized (3% isoflurane) and injected with Chlorprothixene Hydrochloride (IM, 30 μl of a 0.33 mg/ml solution, Santa Cruz). Recordings started at least 30 min after injection. Mice were put on a 37°C heating pad in the dark, and isoflurane levels were reduced to 0.5–0.75% prior to recording to bring the mice to a lightly anesthetized state, where they do not move but are sensitive to pain. Spontaneous activity was recorded using 20–120 mW of 1100 nm excitation light (Insight X3, Spectra-Physics) and a resonant-scanner two-photon microscope (512 × 512 pixels, 30 Hz acquisition rate, Bergamo II, Thorlabs). Light intensity was controlled using a Pockels Cell (model 350-105, Conoptics) to maintain similar signal-to-noise ratios across different animals. Data were recorded on a weekly basis from all animals, and each recording session included acquisition of 200 s for each field of view (FOV), 3–5 FOVs from CA1 and 2–4 FOVs from dentate gyrus (DG) for each mouse.
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7

Intrinsic Signal Imaging of Cortical Hemodynamics

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Intrinsic signal imaging was performed on the STOMPM microscope or on the Thorlabs Bergamo II. The cortex was illuminated with blue light to obtain a blood vessel map, after which collimated 630 nm light from an LED (Thorlabs) was directed onto the surface of the brain to measure intrinsic hemodynamic responses. Visually evoked responses were collected at ~50 Hz using an Andor Xyla camera. Visual stimuli were blockwise grating stimuli (8s on, 8s off, .06-.1 cycles per degree, 16 directions).
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8

Two-Photon Imaging of Drosophila Brain Neurons

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Imaging experiments were carried out as previously described28 (link) using a two-photon microscope with a movable stage (Thorlabs Bergamo II) and a fast piezoelectric objective scanner (Physik Instrumente P725) for volumetric imaging. We used a Chameleon Vision-S Ti-sapphire femtosecond laser tuned to 940 nm for two-photon excitation. Images were collected using a 20× 0.95-NA objective (Olympus). Emission fluorescence was filtered with a 525-nm bandpass filter (Thorlabs) and collected using a GaAsP photomultiplier tube (Hamamatsu).
For EPG neurons, the imaging region was centred on the protocerebral bridge, where EPG axons terminate. The imaging view was 256 × 128 pixels, and 8–12 slices deep in the z axis (4-6 µm per slice), resulting in a 6–9 Hz volumetric scanning rate. For ExR2 neurons, the imaging region was centred on the bulb and ellipsoid body. The imaging view was 256 × 128 pixels, and 12 slices deep in the z axis (6-8 µm per slice), resulting in a 6–7 Hz volumetric scanning rate.
Volumetric z-scanning signals from the piezoelectric objective scanner were acquired simultaneously with analog output signals from the visual panorama and/or analog outputs from FicTrac 2.1 through a NiDAQ PCI-6341 at 40 kHz. Data were acquired using ScanImage 2018 (Vidrio Technologies) with National Instruments hardware from Vidrio (NI PXIe-6341).
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9

Multiphoton Imaging with Customized Setup

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It is taken with a commercial multiphoton microscope with both 2P and 3P light path (Bergamo II, Thorlabs). A high numerical aperture (NA) water immersion microscope objective (Olympus XLPLN25XWMP2, 25 X, NA 1.05) is used. For GFP and THG imaging, fluorescence and THG signals are separated and directed to the detector by a 488 nm dichronic mirror (Di02-R488, Semrock) and 562 nm dichronic mirror (FF562-Di03). Then the GFP and THG signals are further filtered by a 525/50 nm band-pass filter (FF03-525/50, Semrock) and 447/60 nm (FF02-447/60, Semrock) band-pass filter, respectively. The signals are finally detected by GaAsP photomultiplier tubes (PMTs) (PMT2101, Thorlabs).
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10

In Vivo Two-Photon Microscopy for Barrel Cortex Imaging

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Fluorescence images were obtained using a custom-built in vivo two-photon microscope (Bergamo II, Thorlabs), equipped with a Nikon ×16 (0.8NA, 3 mm WD) or an Olympus ×20 objective lens (1.0NA, 2.5 mm WD) and GaAsP PMTs (Hamamatsu) and controlled by ThorImage. GCaMP6f and Rhodamine B dextran or Texas Red dextran were excited at 920 nm using a tunable Ti:sapphire laser (Tiberius, Thorlabs). Green fluorescence signals were obtained using a 525/50-nm band-pass filter, and orange/red signals were obtained using a 605/70-nm band-pass filter. Imaging was performed at a rate of 3.2 or 3.8 Hz. Animal behaviors were captured using a near-infrared LED (780 nm) and a camera. A 5-s air puff that deflected all whiskers on the contralateral side without impacting the face was applied using a Picospritzer, and vessel surface area and astrocyte Ca2+ responses were monitored in the barrel cortex (layers I–III).
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