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Cfx384 qrt pcr machine

Manufactured by Bio-Rad

The CFX384 qRT-PCR Machine is a real-time quantitative reverse transcription polymerase chain reaction (qRT-PCR) instrument designed for gene expression analysis. The device supports 384-well microplates and provides precise temperature control and fluorescence detection for accurate quantification of nucleic acid samples.

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4 protocols using cfx384 qrt pcr machine

1

Quantitative RT-qPCR Protocol for Gene Expression

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RT-qPCR was conducted using iTaqTM Universal SYBR® Green Supermix (Bio-Rad) where 2.5 µL of each cDNA was added to the 384 well plate and inserted into a BioRad CFX384 qRT-PCR machine. The obtained data was analyzed by normalization to the reference gene, namely glyceraldehyde 3-phosphate dehydrogenase (GAPDH). Primers were obtained from Eurofins Genomics, Germany.
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2

RNA Isolation and qPCR Analysis of Inflammatory Markers

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Total RNA from frozen tissues (liver, cortex, kidney) was isolated using TRIzol® Reagent per the manufacturer’s instructions (Thermo Fisher; Waltham, MA) and quantified via Qubit assay as we have described previously [30 (link),33 (link),71 (link),72 (link),73 (link)]. First-strand complementary DNA (cDNA) was synthesized with random primers using Bio-Rad iScript cDNA Synthesis Kit. All qPCR reactions were then carried out using Bio-Rad SsoAdvanced SYBR Green mix on a Bio-Rad CFX384 qRT-PCR Machine. Gene expression was carried out in the liver, kidney, and cortex for IL6 (For—5′ AGTTGCCTTCTTGGGACTGA and Rev—5′ TCCACGATTTCCCAGAGAAC) TNF-α (For—5′ ATGAGAAGTTCCCAAATGGC and Rev—CTCCACTTGGTGGTTTGCTA) and IL-1β (For—5′ GCCCATCCTCTGTGACTCAT and Rev—5′ AGGCCACAGGTATTTTGTCG), and all data were normalized to Peptidylprolyl isomerase A (PPIA; For- 5′ GCGTCTSCTTCGAGCTGTT and Rev—5′ RAAGTCACCACCCTGGCA) using the ∆∆Ct method.
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3

Extraction and Quantification of Total RNA

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Total RNA from frozen tissues was isolated using the Trizol procedure as described previously (36 (link)). In brief, first-strand complementary DNA (cDNA) was synthesized with random primers and total RNA as a template using Biorad iScript cDNA Synthesis Kit. All qPCR reactions were carried out using Biorad Sso Advanced SYBR Green mix on a Biorad CFX384 qRT-PCR Machine. All data were then normalized to the housekeeping gene, 18S, using the delta delta Ct method. Primer sequences are provided in Supplementary Table 1.
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4

RNA Isolation and qPCR Analysis

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The total RNA from the frozen tissues was isolated using the TRIzol® Reagent per the manufacturer’s instructions (Life Technologies). First-strand complementary DNA (cDNA) was synthesized with random primers using Bio-Rad iScript cDNA Synthesis Kit. All qPCR reactions were carried out using Bio-Rad Sso Advanced SYBR Green mix on a Bio-Rad CFX384 qRT-PCR Machine. Target genes included GRIN2B, TNFα, CDKN1A, IL1β, NFκB/p65, and CCL2, and all data were normalized to Actb.
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