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9 protocols using probenecid

1

Intracellular Calcium Measurement in H295R Cells

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Two days after plating 2.5 × 104 H295R cells into 96-well plates, the cells were incubated with and without 10 mM YM750 for 24 h. The cells were then loaded with Fluo 4-AM (Dojindo, Rockville, MD, USA; 5 mg/mL) in the presence of 1.25 mM probenecid (Dojindo) and 0.04% Pluronic F-127 (Dojindo) for 1 h. Cells were then washed with PBS and the recording medium containing 1.25 mmol/L probenecid and 20 mM KCl was added to the media. Changes in intracellular calcium concentration were determined by measuring the fluorescence intensity (excitation wavelength, 485 nm; emission wavelength, 535 nm).
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2

Angiotensin II-Induced Calcium Signaling

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H295R cells (4×104 cells/well) seeded in 96-well plates were incubated in 100 μl regular media for several days. Then they were incubated either without or with PA024 at appropriate concentrations in DMEM supplemented with 1% stripped FBS media for 24 h. Thereafter, the cells were loaded with Fluo4-AM (Dojindo, Kumamoto, Japan; 5 mg/ml) in the presence of 1.25 mmol/l probenecid (Dojindo) and 0.04% Pluronic F-12 (Dojindo) for 1 h. They were then washed with PBS, and the recording medium containing 1.25 mmol/l probenecid, and Ang II (100 nmol/L) was added to the media. The change of intracellular calcium was determined by fluorescent intensity (excitation at 485 nm, emission at 535 nm).
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3

Measuring Intracellular Calcium Dynamics

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Intracellular calcium assay was performed as previously described [30 (link)]. The culture medium of the Flp-In NCC HEK293 cells was replaced by loading buffer containing 5 μg/ml Fluo 4-AM (Dojindo, Kumamoto, Japan), 1.25 mmol/l probenecid (Dojindo, Kumamoto, Japan), and 0.02% Pluronic F-127 (Dojindo, Kumamoto, Japan). Following incubation with 5 mM EGTA or 1 μM SEA0400 in the loading buffer for 1h at 37°C, the loading buffer was replaced by recording medium containing 1.25 mmol/l probenecid. NCX1 siRNA silencing was applied 48 h before loading buffer replacement. Following the administration of KCl (final concentration: 10 mM), the fluorescence intensities of Fluo 4 were quantified from five regions of interest using LSM 510 Meta confocal microscopy and the Zen 2009 software (Carl Zeiss, Oberkochen, Germany).
http://dx.doi.org/10.17504/protocols.io.baihicb6
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4

Measuring FFAR1 receptor activation in CHO cells

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Chinese hamster ovary (CHO) cells stably expressing human FFAR1 with different receptor mRNA expression levels (clones #104 and #2) [32 (link)] were cultured with minimum essential medium-alpha (FUJIFILM Wako) containing 10% dialyzed fetal bovine serum (FBS, GE Healthcare Life Sciences, Buckinghamshire, UK), 10 mM HEPES (Thermo Fisher Scientific, Waltham, MA), 100 IU/mL penicillin, and 100 μg/mL streptomycin in 5% CO2 at 37°C. Cells (1 x 104 cells /well) were seeded in 384 well plates and then incubated overnight. After removing of the medium, cells were incubated in 30 μL of loading buffer (Hanks' Balanced Salt Solution containing 20 mM HEPES, 0.1% fatty acid-free BSA (FUJIFILM Wako), 0.08% Pluronic F127 (#CSK-01F, Dojindo Kumamoto, Japan), 2.5 mmol/L Probenecid (#CSK-03F, Dojindo) and 2.5 μg/mL Fluo4 (#F311, Dojindo)) for 60 min in 5% CO2 at 37°C. Test compounds at various concentrations were added into the cells and increase of the intracellular Ca2+ concentration was monitored by the FLIPR Tetra system (Molecular Devices, Tokyo, Japan) for 180 sec. EC50 was calculated by data analysis using a 4-parameter logistic equation in Graphpad Prism 7 software.
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5

Analyzing hiPSC-CM Spheroid Responses

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Pure hiPSC-CM spheroids on day 5, after they started beating, were analyzed after replacing the medium with fresh medium and performing incubation at 37°C for 30 min. We exposed the spheroids to several compounds at different concentrations for 30 min and recorded the findings with a BZX-710. The beating rates were calculated based on moving images. We also detected the onset of the changes in beating after the administration of COA-Cl. We continuously observed the beating spheroids before and after the administration of COA-Cl using fluorescent calcium imaging. The spheroids were incubated for 1 h at 37°C in loading buffer containing 10 μM fluo4 acetoxymethyl ester (Dojindo, Kumamoto, Japan) and detergents (0.02% Pluronic F-127, and 1.25 mmol/l Probenecid) (Dojindo). The samples were washed with recording buffer (Dojindo) for 20 min at 37°C, and calcium transients were recorded using fluorescence imaging with an excitation wavelength of 488 nm. The videos were converted to a series of TIFF format pictures, and the relative fluorescence (in relative fluorescence units [RFU]) of the spheroids was measured using the BZ-X Analyzer software program. The measured RFU was graphed to determine the beating profiles of RFU with the Excel software program.
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6

Wnt5a-Induced Calcium Signaling in mpkCCD

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The culture medium of the mpkCCD cells or dissection solution of mouse kidneys was replaced with loading buffer containing 5 μg ml−1 Fluo4-AM (Dojindo), 1.25 mmol l−1 probenecid (Dojindo), and 0.04% Pluronic F-127 (Dojindo). After incubation for 1 h at 37 °C, loading buffer was replaced with recording medium containing 1.25 mmol l−1 probenecid. The mpkCCD cells and isolated CCD of mouse kidneys were then placed under confocal laser scanning microscopy. Wnt5a (500 ng ml−1) was added, and calcium responses were monitored by the LSM510 Meta. Fluorescence intensities of Fluo4 were quantified from six regions of interest using Zen 2009 software.
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7

Quantifying Receptor-Mediated Calcium Signaling

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Chinese hamster ovary (CHO)‐K1 cells expressing M1R–M5R were plated on a 96‐well black, clear bottom plate at 30 000 cells/well and incubated at 37°C in an atmosphere of 5% CO2 for 1 day. On the day of the assay, cells were incubated with calcium dye buffer (Hanks’ Balanced Salt Solution (HBSS) containing 20 mmol/L HEPES, 0.1% fatty acid‐free bovine serum albumin (BSA), 0.08% pluronic F127 (Dojindo Laboratories), 2.5 μg/mL Fluo‐4 (Dojindo Laboratories), and 1.25 mmol/L probenecid (Dojindo Laboratories)) for 30 minutes at 37°C in an atmosphere of 5% CO2 and then incubated for 30 minutes at room temperature. To measure Ca2+ mobilization using CellLux (PerkinElmer), cells were stimulated with T‐495 or MK‐7622 (0.01‐1000 nmol/L for PAM activity; 0.3‐10 000 nmol/L for agonist activity) in assay buffer (HBSS containing 20 mmol/L HEPES and 0.1% fatty acid‐free BSA) with or without an EC20 concentration of ACh. The inflection point (IP) and EC50 values were calculated using the following equation by GraphPad Prism 5 software (GraphPad Software Inc): Y=Bottom+(Top-Bottom)1+10(Log IPorEC50-X×HillSlope))
where X and Y are the log concentration of a compound and the percentage of Ca2+ response, respectively, and Top and Bottom are the upper and lower plateaus, respectively.
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8

Calcium Influx Assay in Primary Neurons

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Ca2+ influx assay using primary neurons was performed as previously described21 (link). After 5 days of culture, the cells plated on poly-D-lysine coated 96-well plates (Corning Incorporated) at 2 × 104 or 5 × 104 cells/well were used for experiments with PF-04958242 or TAK-653, respectively. Fluorescent calcium indicator dye solution (Calcium4 assay Kit, Dojindo, Kumamoto, Japan) in Ca2+ reaction buffer (DMEM, HEPES and BSA) containing Probenecid (Dojindo) was added and incubated for 60 min in 5% CO2 at 37 °C. After washing once, the relative increases in intracellular Ca2+ levels stimulated by compounds in the presence and absence of AMPA were monitored. Details are described in the Supplementary Information.
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9

Screening for Novel Bioactive Compounds

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Cmpd101 hydrochloride was synthesized by Takeda Pharmaceutical Company (Fujisawa, Japan). LQ1 and LQ4 were purchased from Enamine Ltd. (Kiev, Ukraine). LQ2, LQ3, and LQ5 were obtained from TimTec (Newark, DE), Cerep SA (Poitiers, France), and Pharmeks Ltd. (Moscow, Russia), respectively. Rat hepatoma McA-RH7777 cells were purchased from DS Pharma Biomedical (Osaka, Japan). Human astrocytoma 1321N1 EA-Arrestin 2 (1321N1-arrestin) cells were purchased from DiscoveRx (Fremont, CA). Fluo-4 AM and probenecid were purchased from Dojindo Laboratories (Kumamoto, Japan). Other materials were obtained from Wako Pure Chemical Industries (Osaka, Japan) unless noted otherwise.
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