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17 protocols using anti traf6

1

Western Blot Analysis of Protein Signaling

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The cells were taken from the incubator to remove the culture medium and washed twice with precooled PBS. Proteins were harvested using whole cell lysis assay (KeyGEN Biotech, China) according to the manufacturer's instructions. After valuing the concentration and equaled the quantity of loading samples, the proteins of different groups were separated by SDS-PAGE and subsequently transferred onto PVDF membranes (Millipore, MA, USA). Afterwards, the membranes were blocked with 5% nonfat milk in TBST at room temperature for 1 h, followed by incubation with antibodies against targeting protein overnight at 4°C. The primary antibodies including anti-CCR5, anti-TRAF6, anti-NF-kB, and anti-PI3K were purchased from Abcam (Cambridge Science Park, UK), and used as the following concentration: anti-CCR5: 1 : 1000; anti-TRAF6:1 : 2000; anti-NF-kB:1 : 500; anti-PI3K:1 : 250; and anti-β-Actin:1 : 5000. Following being washed with TBST buffer, the membrane was stripped with appropriate HRP-conjugated secondary antibodies (Abcam, CA, USA) for 1 h at room temperature, followed by visualized using the enhanced Western Bright ECL reagents (Cell Signaling Technology, USA). Eventually, bands were imaged and analyzed by a chemiluminescence detection system (Bio-Rad, USA). The experiments were repeated at least three times to ensure reproducibility.
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2

Immunoprecipitation of TRAF6 from BMMs

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WT and CD44 knockout mouse BMMs were cultured in complete medium with 30 ng/ml M-CSF and 50 ng/ml RANKL for 5 days, and cells were harvested in in HEPES lysis buffer (20 mM HEPES pH 7.2, 50 mM NaCl, 0.5% Triton X-100, 1 mM NaF, 1 mM dithiothreitol) supplemented with protease inhibitor cocktail (Roche, Indianapolis, Indiana, USA) for immunoprecipitation. The cell lysates were transferred to a new fresh tube. Next 5 μg/ml rabbit polyclonal anti-TRAF6 (Abcam, USA) were added for 3 h and incubated the mixture with proteins A/G PLUS-agarose beads (Santa Cruz Biotechnology, USA) over night at 4 °C. Immune complexes were washed with cold lysis buffer for three times. After the final wash, we aspirated and discarded the supernatant and resuspended the pellet in 1X electrophoresis sample buffer and boiled it for 10 min.
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3

Western Blot Analysis of Tight Junction Proteins

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Primary antibodies used for Western blot analysis were anti-zonula occludens 1 (ZO-1), anti-occludin, anti-claudin-1 (Thermo Scientific, Rockford, USA), anti-phosphorylated p65, anti-phosphorylated IκB, anti-p65, anti-IκB (Cell Signaling Technology, Danvers, USA), anti-TIRAP (Toll-interleukin 1 receptor domain containing adaptor protein), anti-IRAK1 (interleukin-1 receptor-associated kinase 1), anti-IRAK4 (Proteintech, Wuhan, China), anti-TRAF6 (TNF receptor-associated factor 6), anti-TLR4 (Abcam, Cambridge, MA, USA), anti-β-actin, and anti-Histone H3 (Hua'an Biological Technology, Hangzhou, China). The antibody-antigen complexes were visualized by using the ECL (Electrochemiluminescence) kit (Millipore, Billerica, USA). The intensity of the immunoreactive bands was semiquantified using the GeneTools (SynGene, Frederick, USA).
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4

Western Blot Antibody Reagents

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HRP conjugated rabbit and mouse secondary antibodies were purchased from GE Healthcare (Waukesha, WI), while goat-HRP and actin antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies against Akt, pAktS473, pAktT308, GSK3β, pGSK3β, MTOR and pMTORS2481, and pMTORS2488 were purchased from Cell Signaling (Beverly, MA). HA-HRP was purchased from Roche (Indianapolis, IN), while anti-TRAF6 and BAFF-R FITC antibodies were purchased from Abcam (Cambridge, UK). IgG1 FITC was purchased from Becton Dickinson (Franklin Lakes, NJ), while IgG1 PE and TACI PE were purchased from R&D Systems (Minneapolis, MN).
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5

Western Blot Analysis of Inflammatory Signaling

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Whole protein in the serum was collected using a whole-protein extraction kit (Nanjing KeyGEN Biotech, Nanjing, China) according to the manufacturer’s instructions. The protein concentration was measured using a bicinchoninic acid kit (Nanjing KeyGEN Biotech). The different proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes (Bio-Rad). The membranes were blocked in Tris-buffered saline and Tween 20 (TBST) blocking buffer that contained 5% nonfat dried milk for 2 h at room temperature and immunoblotted with primary specific antibodies (anti-TLR4, anti-TRAF6, anti-TAK1, IκB-α, p-IκB-α, anti-NF-κB (p65), anti-p-NF-κB (p-p65), and anti-β-actin (Abcam, UK). After washing with TBST, the strips were incubated with horse-radish peroxidase-conjugated goat anti-mouse IgG (HuaAn, Hangzhou, China). Proteins were detected using a SuperSignal™ West Femto Maximum Sensitivity Substrate (Thermofisher) and visualized using a ChemiDoc™ MP Imaging System (Bio-Rad).
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6

Western Blot Analysis of Signaling Proteins

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Cells were cultured or treated by rBFT1, followed by harvesting at predetermined time points. After extensive washing, cells were lysed using Whole Cell Lysis Assay (KeyGEN Biotech, China) according to the manufacturer’s instructions and proteins from the lyste were harvested by centrifugation at 12,000 × g for 5 min at 4°C. Protein concentrations were determined by the BCA Assay kit (KeyGEN Biotech, China). Total protein (42 kDa) from each lysate was then separated by SDS-PAGE and subsequently transferred onto PVDF membranes (Millipore, MA, USA). Afterwards, the membranes were blocked with 5% non-fat milk in TBST at room temperature for 1 h, followed by incubation with antibodies against protein of interest overnight at 4°C. The antibodies used in this study included anti-NF-κB/P65 (1:100 in PBS), anti-Macrophage Inflammatory Protein 1α/CCL3 (100 μg/mL in PBS), anti-CCR5 (1:100 in PBS), anti-PI 3 Kinase/P85α (1:200 in PBS), and anti-TRAF6 (1 µg/mL in PBS) (Abcam, CA, USA). After washing with TBST, membranes were striped with appropriate HRP-conjugated secondary antibodies (1:5,000, Abcam, CA, USA) for 1 h at room temperature, followed by visualization using the enhanced Western Bright ECL reagents (Cell Signaling Technology, USA). Protein bands were scanned and analyzed by a chemiluminescence detection system (Bio-Rad, USA).
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7

Western Blot Analysis of Immune Regulators

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Cells were collected and lysed in M-PER Mammalian Protein Extraction Reagent. All samples were normalized by their protein concentrations and separated in 10% SDS-PAGE gels and then transferred to membranes (Washington, NY) using the wet transfer blotting system (Hercules, CA). The antibodies used for Western blotting were: anti-CD63 (Abcam), anti-TRAF6 (Abcam), anti-TLR4 (Abcam), anti-NF-kB (Abcam), anti-IRKA1 (Abcam), and anti-GAPDH (Abcam), at a dilution of 1:1000. Then, protein bands were developed using ECL reagents, whose images were acquired using the ChemiDoc Imaging system. This western blot examination was repeated three times.
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8

Molecular Pathway Analysis of TLR4-Mediated Inflammation

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Trizol reagent, RNAios and Real-time PCR kit were obtained from TaKaRa Company (Dalian, China). Anti- MyD88, anti-TRAF6, anti-TRIF and anti-TLR4 antibodies were offered from Abcam Biotechnology (MA, USA). LPS was taken from Sigma-Aldrich (MO, USA). The immunohistochemistry kits and HRP-labeled secondary antibodies were bought from Boster Biotechnology (Wuhan, China). The IL-1β and IL-6 ELISA kit were purchased from Dkewei Biotechnology (Beijing, China). Corilagin was received from China National institutes for food and drug control.
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9

Protein Expression in Diabetic Rat DRGs

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TLR4, TRAF6, and p65 expressions in T7-T10 DRGs from CON and DM rats were detected using Western blotting analysis. The primary antibodies used are listed below: anti-TLR4 (1:1000; Abcam, USA), anti-TRAF6 (1:1000; Abcam, USA), anti-p65 (1:200; Santa Cruz, USA), and anti-GAPDH (1:1000; Goodhere, China). Immunoreactive proteins were detected by enhanced chemiluminescence (ECL kit; GE Healthcare Pharmacia Biotech). The densities of protein bands were analyzed with NIH Image software.
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10

TRAF6 Protein Expression Analysis

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Cells were lysed in laemmli (Sigma, USA). Protein concentration was assessed by bicinchoninic acid (BCA) assay. Total protein lysates were separate by Tricine-SDS-PAGE and transfer onto 0.22-μm nitrocellulose (NC) filter membranes (Millipore, Bedford, MA, USA). Antibodies used were anti TRAF6 (Abcam, MA, USA). β-actin was used as a control. Western blots were quantified by Image J software. All experiments were performed in triplicate, and the representative results were shown.
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