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22 protocols using auriga crossbeam workstation

1

Specimen Preparation for SEM Imaging

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Fixation for SEM was carried out as described previously [44 (link)]. Cells were prefixed with 2.5% glutaraldehyde in 75 mM cacodylate buffer also including 2 mM MgCl2 (pH 7.0). Afterward, the cells were applied to glass slides, covered with a cover slip, and rapidly frozen in liquid nitrogen. This was followed by detaching the coverslip and storing the glass slide in a fixation buffer overnight. The next steps were: four times washing with buffer (10, 20, 30, 50 min), post-fixation with 1% osmium tetroxide for 30 min, washing with buffer (20 min) and double distilled water (5, 15, 90 min). The samples were dehydrated in a graded acetone series, critical-point-dried, mounted on stubs, and sputter-coated with platinum. For imaging, a Zeiss Auriga crossbeam workstation (Zeiss, Oberkochen, Germany) with an acceleration voltage of 1.5 kV and a working distance of 5 mm was used.
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2

3D Reconstruction of Pycnogonid Brain

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To approach the visual neuropils, the specimen was trimmed transversally with a diamond knife on an RMC-MTXL ultramicrotome until just before the visual neuropils appeared. After trimming of a cuboid-shaped ‘mesa’ containing the pycnogonid brain with a glass knife [79 ], this mesa was removed from the epoxy block and mounted on an aluminum stub covered with a thin layer of unpolymerized epoxy resin as glue. The transversal block face was now oriented vertically on the stub, allowing transversal milling of the left neuropils by the FIB. After polymerizing the epoxy resin (one day at 60°C), the stub was coated with carbon with a Balzers High Vacuum Evaporator BAE 121 to make it conductive.
The sample was milled and imaged with a Zeiss Auriga CrossBeam Workstation (Carl Zeiss Microscopy, Oberkochen, Germany). For slicing, the conditions were as follows: 500 pA milling current of the Ga-emitter; with each step, 10 nm of the epoxy resin was removed with the focused ion beam. SEM images (2,048 × 1,536 pixels) were recorded from every third slice at 1.5 kV, resulting in a stack of 682 grayscale images (voxel size 32 × 32 × 30 nm; total volume: 65.5 × 49.2 × 20.5 μm).
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3

Electron Microscopy Analysis of Fiber Morphology

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SEM images were captured using an SEM-FIB Zeiss Auriga CrossBeam Workstation (Jena, Germany). Prior to image acquisition, all the samples were coated with a thin layer of iridium, ensuring a good electron outflow. Average fiber diameter and fiber angular distribution were evaluated from 100 and 50 measurements, respectively, performed in SEM images using the ImageJ 1.53 software (NIH, Bethesda, Rockville, MD, USA).
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4

Particle Characterization by Electron Microscopy

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The TEM grid specimens were imaged and analyzed in a Hitachi SU6600 field emission scanning electron microscope (Hitachi, Tokyo, Japan) equipped with a Bruker energy-dispersive X-ray detector (Bruker Nano GmbH, Berlin, Germany) and a NORDIF electron backscatter (EBSD) detector (NORDIF, Trondheim, Norway). For elemental analysis of particles, an acceleration voltage of 15 keV, analytical working distance of 10 mm and electron probe current 7–8 nA were used. For aggregates/agglomerates with primary particle sizes less than 20 nm, an area of approximately 100 × 100 nm was scanned for X-ray acquisition in a particle–dense area to obtain elemental spectra. For larger particles (> 30 nm) X-ray spectrums from single particles were obtained. In addition, an Auriga Crossbeam Workstation (Carl Zeiss AG, Oberkochen, Germany), equipped with INCA X-Max silicon drift detector (Oxford Instruments, Abingdon, UK) for energy dispersive X-ray microanalysis was used.
The phase and elemental composition of the particles were studied by a Zeiss Libra 120 transmission electron microscope equipped with an OMEGA energy filter (Carl Zeiss AG, Oberkochen, Germany). Particle diameter measurements were conducted by statistical analysis of TEM images using the Minitab version 16 software (Minitab Statistical Software, Minitab 16; https://www.minitab.com).
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5

Electron Microscopy Analysis of Fiber Morphology

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SEM images were captured using an SEM-FIB Zeiss Auriga CrossBeam Workstation (Jena, Germany). Prior to image acquisition, all the samples were coated with a thin layer of iridium, ensuring a good electron outflow. Average fiber diameter and fiber angular distribution were evaluated from 100 and 50 measurements, respectively, performed in SEM images using the ImageJ 1.53 software (NIH, Bethesda, Rockville, MD, USA).
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6

Scanning Electron Microscope Observation

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SEM observations were carried out using a Carl Zeiss AURIGA CrossBeam Workstation. Samples (filter paper with dry suspension) were placed on the SEM support using carbon conductive double-sided adhesive tape.
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7

Characterization of Airborne Nanoparticles in Metal Smelting

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Airborne particles were sampled on polycarbonate filters in the workspace of the aluminum titanium master alloy smelting shop at VSMPO-AVISMA Corporation, Verkhnyaya Salda, Sverdlovsk Region, Russia, and analyzed for elemental composition by SEM-energy-dispersive spectroscopy using the Carl Zeiss AURIGA® CrossBeam® Workstation (Carl Zeiss NTS, Oberkochen, Germany). Table 5 demonstrates the prevalence of the following three elements in the average composition of the samples: titanium (17.5%); aluminum (14.8%); silicon (12.0%), represented by oxides of these metals.
Based on the above data, aqueous suspensions of TiO2, SiO2, and Al2O3 nanoparticles were specially prepared for the experiment by laser ablation of the surface of a superpurity metal plate under a layer of deionized water. The particles had spherical or near-spherical shape (see Figure 9 showing a scanning electron microscopy (SEM) image of Al2O3 particles as an example) and a symmetrical size distribution (Figure 10) with the mean (±s.d.) diameters of 27 ± 7 nm for TiO2, 43 ± 11 nm for SiO2, and 21 ± 6 nm for Al2O3.
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8

Characterization of Reduced Graphene Oxide

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For the investigation of the morphology of the samples, scanning electron microscopy (SEM) was used (Auriga CrossBeam Workstation, Carl Zeiss, Oberkochen, Germany). To examine the chemical structure of GO and rGO, X-ray photoelectron spectroscopy (XPS) was used (UHV Multichamber XPS, Prevac, Rogów, Poland). Analyses of the reduction efficiency and structural changes of the GO and rGO samples were performed using a Raman spectroscopy system (Renishaw Invia, Wotton-under-Edge, UK) at room temperature; the laser was excited at a wavelength of 532 nm and used at a power lower than 1 mW. The electronic properties of GO and rGO were measured using the Hallotron ECOPIA HMS 5500 system.
For SEM and Raman spectroscopy analysis, the graphene materials were deposited onto a Si substrate. For XPS measurements, powdered (freeze-dried) samples were used. For the electrical measurements, freeze-dried samples were pressed into a tablet form.
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9

Electron Microscopy of Bacterial Extracellular Vesicles

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Planktonic-grown bacteria at OD600 = 3–4 (1.5–2 × 109 cfu/mL), gradient-collected EVs (0.5–1.5 × 1010 particles), and apoplastic fluids passed through 0.2 µm filters were used for SEM. The cells were chemically fixed using 2.5% glutaraldehyde in 50 mM cacodylate buffer (pH 7.0) containing 2 mM MgCl2. Then, the cells were applied to a glass slide, covered with a cover slip, and plunged frozen in liquid nitrogen. After this, the cover slip was removed, and the cells were placed in a fixation buffer again. After washing four times with buffer, post-fixation was carried out with 1% OsO4 for 15 minutes. Two additional washing steps with buffer were followed by three times washing with double distilled water. The samples were dehydrated in a graded acetone series, critical point dried, and mounted on an aluminium stub. To enhance conductivity, the samples were sputter coated with platinum. Microscopy was carried out using a Zeiss Auriga Crossbeam workstation at 2 kV (Zeiss, Oberkochen, Germany). The vesicle size was manually measured across five randomly selected SEM micrographs using Fiji software (74 (link)).
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10

Comprehensive Nanostructure Characterization

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All the nanostructures’ characterization was performed with the synthesis product in powder form. In order to study the morphology and elemental composition of the nanostructures, scanning electron microscopy (SEM) and energy dispersive X-ray spectroscopy (EDS) inside an AURIGA CrossBeam workstation were performed (Zeiss, Oberkochen, Germany). The structural characterization was carried out by X-Ray diffraction (XRD) using X’Pert PRO MRD diffractometer (PANalytical, Royston, UK) with Cu Kα radiation and the data acquisition range was 10–90° (2θ) with a step size of 0.033°. Fourier-transform infrared (FTIR) spectra were acquired in the range of 4000–525 cm−1 with 4 cm−1 resolution and 45° incident angle. The data was recorded using a Smart iTR attenuated total reflectance (ATR) sampling accessory (Thermo Scientific, Waltham, MA, USA) equipped with a single bounce diamond crystal on a Thermo Nicolet 6700 Spectrometer (Thermo Scientific, Waltham, MA, USA). Raman spectra were acquired using an inVia Reflex micro-Raman spectrometer (Renishaw, Wotton-under-Edge, UK) equipped with an air-cooled CCD detector and a HeNe laser using a 532 nm laser excitation with a power of 50 mW, with 0.3 cm−1 resolution. All measurements were obtained with an intensity of 50 µW at room temperature in a range of 100–1600 nm, using an integration time of 2 scans (10 s each).
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