Genechip human genome wide snp axiom arrays

Manufactured by Thermo Fisher Scientific

Sourced in United States

The GeneChip Human Genome-wide SNP Axiom Arrays are a set of high-density microarray products designed for genome-wide genotyping of single nucleotide polymorphisms (SNPs) in human genomic DNA samples. The arrays enable the simultaneous analysis of hundreds of thousands of SNP markers across the human genome.

Automatically generated - may contain errors

Lab products found in correlation

Spelling variants of this product

Axiom array (59 citations) GeneChips (22 citations) GeneChip arrays (9 citations) Axiom SNP array (7 citations) SNP arrays (4 citations) Axiom Genome-Wide Human Array (2 citations) Genome-Wide Human SNP Array (2 citations)

2 protocols using genechip human genome wide snp axiom arrays

Genotyping and Autozygosity Mapping Protocol

Cited 1 time

Check if the same lab product or an alternative is used in the 5 most similar protocols

SNP genotyping was performed using GeneChip Human Genome-wide SNP Axiom Arrays according to the manufacturer’s protocols and guidelines (Affymetrix Inc). Generated SNP calls were used for autozygosity mapping using AutoSNPa software (http://dna-leeds.co.uk/autosnpa/) as previously described (35 (link), 36 (link)).

Aboheimed G.I., AlRasheed M.M., Almudimeegh S., Peña-Guerra K.A., Cardona-Londoño K.J., Salih M.A., Seidahmed M.Z., Al-Mohanna F., Colak D., Harvey R.J., Harvey K., Arold S.T., Kaya N, & Ruiz A.J. (2022). Clinical, genetic, and functional characterization of the glycine receptor β-subunit A455P variant in a family affected by hyperekplexia syndrome. The Journal of Biological Chemistry, 298(7), 102018.

+ Open protocol

+ Expand

Genome-wide SNP Genotyping and Loss of Heterozygosity

Check if the same lab product or an alternative is used in the 5 most similar protocols

Genome-wide SNP genotyping was performed using custom axiom arrays (GeneChip Human Genome-wide SNP Axiom Arrays, Affymetrix Inc., Santa Cruz, CA, USA) according to the manufacturer’s protocols and guidelines (Affymetrix Inc.). Resulted genotypes and quality control of the chip runs were performed using Affymetrix’s Axiom Analysis Suite v2.0. The SNP genotypes were transferred to AutoSNPa software [15 (link)], and the genome-wide loss of heterozygosity blocks was detected using the default settings of the software. The shared blocks among the patients were compared to those of healthy individuals in the families.

Aldosary M., Alsagob M., AlQudairy H., González-Álvarez A.C., Arold S.T., Dababo M.A., Alharbi O.A., Almass R., AlBakheet A., AlSarar D., Qari A., Al-Ansari M.M., Oláhová M., Al-Shahrani S.A., AlSayed M., Colak D., Taylor R.W., AlOwain M, & Kaya N. (2022). A Novel Homozygous Founder Variant of RTN4IP1 in Two Consanguineous Saudi Families. Cells, 11(19), 3154.

+ Open protocol

+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Revolutionizing how scientists
search and build protocols!