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Rna extraction protocol

Manufactured by Thermo Fisher Scientific

The RNA extraction protocol is a laboratory procedure used to isolate and purify ribonucleic acid (RNA) from biological samples. The protocol involves a series of steps to break down cellular components, separate RNA from other biomolecules, and concentrate the extracted RNA. The resulting purified RNA can be used for various downstream applications, such as gene expression analysis, reverse transcription, and sequencing.

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3 protocols using rna extraction protocol

1

Comparative AML and MDM mRNA Analysis

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Cultured AML and MDM cells were harvested and RNA isolated using the manufacturer’s RNA extraction protocol (Invitrogen). cDNA was prepared. Real time PCR was performed using predesigned TaqMan human primers in the Applied Biosystems 7500 Real-Time PCR System. Expression levels of basal mRNA in AML and MDM cells were normalized to ACTB and calculated by the ΔΔ threshold cycle (ΔΔCT) method. The detailed protocol is in the detailed supplemental methods section.
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2

Extraction of Granulosa Cells from Murine Ovaries

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Immature (21 d old) and mature (6–8-week-old) WT and gcAdarKO mice were superovulated as described above, at specific time points post-hCG administration mice were euthanized, and the ovaries were dissected free of the ovarian bursa and then rinsed in sterile dPBS to remove blood and tissue debris. Ovaries were then placed in dishes of FHM with 4 mg/ml BSA. Large antral follicles visualized under a Nikon SMZ1000 with a Nikon NI-150 high intensity illuminator were individually punctured with insulin syringes (28 gauge) to allow expulsion of mGCs and cumulus oocyte complexes. Smaller follicles were left with the remaining ovarian tissue which was removed from the dish before naked oocytes and cumulus oocyte complexes were removed and discarded. Mural GCs and the surrounding media was then collected, placed into a 1.5 ml Eppendorf tube and gently pelletized at 800× g, excess media was aspirated using a pipette, and 500 µL of TRI Reagent (Invitrogen, Waltham, MA) was applied to the cell pellet. Solubilized cell pellets were frozen at −80 °C overnight followed by completion of the manufacturer’s RNA extraction protocol (Invitrogen).
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3

Real-Time PCR Quantification of AML and MDM Cells

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Cultured AML and MDM cells were harvested and RNA was isolated using the manufacturer’s RNA extraction protocol (Invitrogen). cDNA was prepared. Real-time PCR was performed using predesigned TaqMan human primers in the Applied Biosystems 7500 Real-Time PCR System. Expression levels of basal mRNA in AML and MDM cells were normalized to actin beta (ACTB) and calculated by the ΔΔ threshold cycle (ΔΔCT) method. The detailed protocol is given in the detailed supplemental methods section.
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