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5 protocols using ribavirin

1

Intraperitoneal Injection of Favipiravir and Ribavirin

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Favipiravir and ribavirin were purchased from MedChemExpress (New Jersey, USA). Both compounds were dissolved in 2.9% sodium bicarbonate (5.6% sodium bicarbonate solution diluted with sterile water; the pH is approximately 7.5) for administration via intraperitoneal (i.p.) injection.
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2

Antiviral Antibody Detection Protocol

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Mouse monoclonal anti-VSV-G (used at 1:1000) and HSV-ICP8 (1:1000) were obtained from Santa Cruz lnc. (Santa Cruz, CA, USA). The antibodies to actin (1:1000), goat anti-mouse secondary antibodies conjugated to horseradish peroxidase (HRP), and goat anti-rabbit secondary antibodies conjugated to HRP (1:10,000) were obtained from Beyotime Biotechnology (Haimen, China). The rabbit polyclonal antibody to phosphorylated (p)-eIF4E (Ser 209, 1:1000) was purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit polyclonal antibody to eIF4E (1:1000) was purchased from Proteintech (Wuhan, China). Mouse polyclonal antibody to PEDV-N (1:1000) was purchased from Alpha Diagnostic International (San Antonio, TX, USA). Rabbit polyclonal antibody to AIV-NP (1:2000) was purchased from Abcam (Cambridge, MA, USA). The antibodies to NDV-NP (1:2000) and PRV-gC (1:1000) were preserved in our laboratory. Antibodies were diluted in phosphate-buffered saline (PBS) containing 5% skim milk (pH 7.3). Ribavirin, acyclovir, quercetin, and the mitogen-activated protein kinase (MAPK)-interacting kinase 1 and 2 (MNK1/2) kinase inhibitors CGP57380 were obtained from MedChemExpress (Monmouth Junction, NJ, USA).
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3

ZIKV Infection Assay in Cell Lines

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The human lung carcinoma cell line A549, African green monkey kidney epithelial cell line Vero, and human astrocytoma cell line SNB19 were obtained from the Cell Bank of the Chinese Academy of Sciences (CBCAS), Shanghai, China and cultured in DMEM (Invitrogen, Carlsbad, CA, USA) containing 10% fetal bovine serum (FBS) (GIBCO, Carlsbad, USA), 2 mM L-glutamine, 100 μg/mL streptomycin, and 100 units/mL penicillin (Invitrogen, Carlsbad, USA) at 37 °C under 5% CO2. All cell lines were authenticated by short tandem repeat (STR) fingerprinting at the Medicine Laboratory of Forensic Medicine Department of Sun Yat-Sen University (SYSU) (Guangzhou, China), and were found to be free of mycoplasma contamination. ZIKV ZG-01 strain (China, 2016, GenBank accession number KY379148), doramectin (catalog no.: HY-17035, batch no.: 109519) and ribavirin (catalog no.: HY-B0434, batch no.: 11970) were supplied in powder form by MedChemExpress LLC (Shanghai, China) with quality control documents.
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4

EV71 Propagation and Inhibition Assay

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Human rhabdomyosarcoma (RD) cells were maintained in Dulbecco’s Modified Eagle Medium (DMEM; Gibco) supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin, 1 μg/ml streptomycin at 37°C in presence of 5% CO2. The EV71 strain was isolated from patient at Xi’an municipal CDC, propagated and expanded in RD cells. This viral stock was used as parental virus. GuHCl was purchased from Sigma-Aldrich and ribavirin was from MedChemExpress. EV71 VP1 and 3AB antibody were purchased from GeneTex. dsRNA antibody (J2) was from English and Scientific Consulting, Hungary. PI4KB antibody was from Proteintech Group and SCARB2 antibody was from Santa Cruz Biotechnology. β-actin antibody was from ABclonal Technology. DAPI, Alexa Fluor conjugated secondary antibodies for microscopy experiments were purchased from Thermo Fisher Scientific.
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5

Antiviral Compound Profiling with Fluorescent RNA

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Fidaxomicin (catalog no.: HY-17580, batch no.: 15276) and ribavirin (catalog no.: HY-B0434, batch no.: 11970) were supplied in powder form by MedChemExpress LLC (Shanghai, China) together with quality control documents. Fluorescently labeled RNA oligonucleotides (Cy5-RNA) as well as unlabeled RNA and DNA oligonucleotides were chemically synthesized and HPLC purified by RiboBio Co., Ltd. (Guangzhou, China). Cy5-RNA primer sequences are shown in Fig. 2f.
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